KEGG T03026: X781

Mannheimia sp. USDA-ARS-USMARC-1261: X781_12400

Entry

X781_12400        CDS       T03026

Name

(GenBank) Ribonuclease D

K03684

ribonuclease D [EC:3.1.13.5]

Organism

mvr Mannheimia sp. USDA-ARS-USMARC-1261

Brite

KEGG Orthology (KO) [BR:mvr00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mvr03016]
    X781_12400
Enzymes [BR:mvr01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     X781_12400
Transfer RNA biogenesis [BR:mvr03016]
Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    X781_12400

SSDB

Motif

Pfam:

DNA_pol_A_exo1 HRDC RNAseD_HRDC_C Knl1_RWD_C COG6_N

Other DBs

NCBI-ProteinID:

AHG73388

UniProt:

W0Q835

Position

complement(1257884..1259008)

AA seq 374 aa
MKSLICYNWIDTNEQLAAVCEEAKKANAIALDTEFIRTRTYYPKLGLVQLYDGKQVSLID
PTAISDFSPFVSLLADKSTIKVLHACSEDLEVFEHQFKQLPEPMLDTQVMAGFAGVGISM
GFAKLVSHYLEVELDKGASRTDWLARPLTEQQLQYAAADVWYLLPIYEKLAEALAKGNWQ
NAVKEECEAISAKIQRVEDKTKAYKNIANAWRLNQQELAILQVLAKWRIDEAEKRDLALN
FVVKEANLLQIAKIQPKHTSQLLEFMHPNEVRIHGKKILWLVEQGKAVKPENYPTLIYRL
VDEKGYKYNMQAMLQKLAEIRPLDLAPELIASKRQLSQLFKWFIDGKPQEKMPELLRGWR
ESFGKQLLSVLSQN

NT seq 1125 nt +upstreamnt +downstreamnt
atgaaatctttaatttgctataactggattgatacaaacgaacaactagcggcagtatgc
gaagaggctaaaaaagcaaatgcaatagcacttgatactgaatttattcgcacccgtact
tactaccccaaattaggtttagttcagttatatgatggcaaacaagtcagcttaatcgac
cctactgcgatttccgatttttcgccttttgtctcattattggcagataaaagcacaata
aaagtgcttcacgcctgtagtgaagatttagaagttttcgagcatcaattcaaacaatta
cctgaaccaatgcttgatacccaagttatggcgggcttcgccggcgttggtatatcaatg
ggatttgcgaaattagtttctcattatttagaggttgaactggataaaggggcttctcgt
acagattggcttgctcgccctttaactgaacagcagttgcaatatgcagcagcagatgta
tggtatctgttaccaatttatgaaaaattggctgaggcgttagcaaaaggcaactggcaa
aatgcggttaaagaagagtgtgaggcaatatcagctaaaattcagcgagttgaagataaa
accaaagcctataaaaatattgctaatgcgtggcgattaaatcagcaagagttggctatt
ttgcaagttttagctaaatggcggattgacgaggcagaaaaacgtgatctggcgttaaat
tttgtggtgaaagaagcaaatctgcttcaaattgctaaaatacagccaaaacacacatct
caattattagaatttatgcaccctaatgaggttagaattcacggcaaaaaaattctctgg
ttagtcgagcaaggaaaagcagtgaaacctgaaaattatcctacgcttatttatcgttta
gtagacgaaaaaggctataaatacaatatgcaagcaatgttgcaaaaattagccgaaatt
cgaccgcttgatcttgccccggaactgatcgcaagtaaacgccaattaagccaactgttt
aaatggtttattgatggtaagccgcaagaaaaaatgcctgaattgttgagaggttggcga
gaatcttttggtaaacaattattatcggtgttatcgcaaaattag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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