KEGG   Myotis brandtii (Brandt's bat): 102256312
Entry
102256312         CDS       T02920                                 
Symbol
UPF1
Name
(RefSeq) UPF1, RNA helicase and ATPase
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
myb  Myotis brandtii (Brandt's bat)
Pathway
myb03013  Nucleocytoplasmic transport
myb03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:myb00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102256312 (UPF1)
   03015 mRNA surveillance pathway
    102256312 (UPF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:myb03019]
    102256312 (UPF1)
Enzymes [BR:myb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     102256312 (UPF1)
    5.6.2.5  RNA 5'-3' helicase
     102256312 (UPF1)
Messenger RNA biogenesis [BR:myb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     102256312 (UPF1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     102256312 (UPF1)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 102256312
NCBI-ProteinID: XP_005873896
Position
Un
AA seq 1113 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGAPRGG
GGGGAGGSGDAVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLR
YKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQS
ALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR
PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC
AKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERE
LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ
LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV
TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA
KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN
EHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNN
LRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQ
LGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRF
GLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq 3342 nt   +upstreamnt  +downstreamnt
atgagcgtggaggcgtacgggcccagctcgcagacgctcactttcctggacaccgaggag
gctgagcttctcggcgccgacacacaaggctccgagttcgagttcacagacttcaccctc
cccagccagacgcagacgcctcccggaggccccggcggccccggggccccacgggggggg
ggggggggtggcgctggtggaagtggagatgctgttggaggacctgagggcatcctgcag
aatggggctgtggatgacagtgtggccaagaccagccagttgctggccgagttgaacttc
gaagaagatgaagaagatacctattacacaaaggacctaccagtacatgcctgcagttac
tgtggaatacatgatcctgcttgcgtggtttactgtaataccagcaagaagtggttctgt
aacggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagggcaaaatgc
aaagaggtgactctgcacaaggatgggccccttggtgagacagtcctggagtgttacaac
tgtggctgccgcaacgtcttcctgcttggcttcatccctgccaaggctgactcagtggtg
gtgctgttgtgcaggcagccctgtgccagtcagagcagcctcaaggacatcaactgggac
agctcgcagtggcagcccctgatccaagatcgctgcttcctctcctggctggtcaagatc
ccttcagagcaggagcagcttcgggcccggcagattacagcccagcagatcaacaagttg
gaggagctttggaaggagaatccttctgccaccttggaggacctagagaagcccggagtg
gatgaggagccgcagcatgtcctcctgcggtatgaggatgcctaccagtaccagaacata
tttgggcctctggtcaagctggaggctgactatgacaagaaactgaaagagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgcctacttc
actttacccaagactgactctgacatgcggctcatgcaaggggatgagatatgcctgcgg
tacaaaggggacctggcgcccctgtggaaagggatcggccacgtcatcaaggtccctgat
aattatggcgatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtg
acacataacttccaggtggatttcgtgtggaaatccacctcatttgacaggatgcagagt
gcgctgaaaacgtttgctgtcgatgaaacctctgtgtcaggctatatctaccataaactg
ctcggccacgaggtggaggacgtcatcatcaagtgccagctgcccaagcgcttcactgca
caggggctgcccgacctcaaccactctcaggtttatgctgtgaagactgtgctgcaaaga
ccgctgagcctgatccagggaccaccaggaacagggaagacagtgacctctgccaccatt
gtctaccacctggcacggcagggcaatgggcctgtgctcgtctgtgctccaagtaacata
gctgtggatcagctgactgagaagatccaccagacggggctgaaagttgtgcggctctgc
gctaagagccgcgaggccattgactccccggtgtccttcctggccctgcacaaccagatc
aggaacatggatagcatgccagagctgcagaagctgcagcagctaaaggacgagactggg
gagctgtcatctgccgatgagaagcggtaccgagccctgaagcgcacagctgaaagggag
ctgctcatgaacgcggacgtcatctgctgcacatgtgtgggtgcaggagaccccaggctt
gccaagatgcagttccgctccattcttatcgacgagagcacccaggccacggagccagag
tgcatggtccctgtggtccttggagccaagcagctgatccttgtgggtgaccactgccag
ctgggccccgtggtgatgtgcaagaaggcagccaaggccgggctgtctcagtcactgttc
gagcgcctggtggtgctcggcattcgtccaatccgcctgcaagtccagtatcggatgcac
cctgcactcagtgccttcccatccaacatcttctatgagggctctctgcagaacggcgtc
actgcagcggatcgagtgaagaaggggtttgacttccagtggccccaacctgataagccg
atgttcttctatgtgacccagggccaggaggagatcgccagttcgggtacctcctacctg
aacaggacggaggctgcaaatgttgagaagatcaccacgaagctgctgaaggcaggtgcc
aagccggaccagattggcatcatcacaccctatgagggccagcgctcctacctggtgcag
tacatgcagttcagcggctccctgcacaccaagctgtaccaggaggtggagattgccagt
gtggatgcattccaggggcgtgagaaggacttcatcatcctttcctgtgtgcgagccaac
gagcaccaaggcatcgggtttttaaatgaccctaggcggcttaacgtggccctgacccga
gcaagatatggagtcatcattgtgggcaaccctaaggccctgtccaagcagcccctgtgg
aaccacctgctgaattactacaaggagcagaaggtgctggtggaggggcctctgaataac
ctgcgggagagcctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccct
ggagcccgcttcatgaccacagccatgtatgatgcccgggaggccatcatcccaggatcg
gtctatgatcggagcagccagggccggccctcgaacatgtacttccagacccacgaccag
ctcggtatgatcagtgctggccccagccatgtggccgccatgaacattcccatccccttc
aacctggtcatgccacccatgccaccaccaggctattttggacaggctaatgggccagct
gcaggccgaggcaccccaaaaggcaagacgggtcgtggtggacgccagaagaaccgcttt
ggccttcctgggcccagccagacaaacctgcccagcagccaggccagccaggatgtggca
tcacagcccttctctcagggggccctgacacagggctacatctccatgagccagccctcc
cagatgagccagcctggtctctcccagcctgagttgtcccaggacagttaccttggtgat
gaatttaagtcccagattgatgtggcgctatcgcaagattctacgtaccaaggggagcgg
gcgtaccagcatggtggagtgacgggactgtctcagtactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (17)   
   Pfam (17)   
All databases (53)   

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