KEGG   Mizuhopecten yessoensis (Yesso scallop): 110452341
Entry
110452341         CDS       T05079                                 
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
myi  Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:myi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110452341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:myi03019]
    110452341
Messenger RNA biogenesis [BR:myi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110452341
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     110452341
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 110452341
NCBI-ProteinID: XP_021356470
Position
Unknown
AA seq 976 aa
MRMDEAYKQRLKTDFPAIGGGKSDQFRNDLMNATEDEVDFDLMNDETFGGEIDDVGFDWE
GQTEKFAGEFEGAIPNLSNKTRDSGYDTVDKSYQSRAEYLEHNLSQLVVDDEDDIDDPAI
LNASKSQRIPHKKQQNLDEIFGPASPPGYLDTEHLVSPSSKNIWGSPVKDTNMPSAIHNL
QSLFDFATKAATHGTPRQDSPVMSTPDRQPMPVAAQMSGGRGATLEEIEQQMMSQPRSIK
KPVTAEELEREMRGEPLDQQVPQMPLHHPRSPYSVPPNMPPPIPGSPAYVGSPAGHGPPK
FHHTPQAQRVPPGFSPIQAQHLLEGRRSPLIGATPPLIGSPGVMGQHRGSPQIAGMSGIS
PITRLTPSPPLGAGLPNLFHSPIQARMMSPYARSAIVGPMGNRLPTQPIGIPQQQLQQRP
PTNQSPYNNSPGGQLPPGSSPGGLYHSPGLNHSPAGPRGPYSGPPPGDRGQHPQGERYTP
QGERGYHHQGDRFTPGERGYPPKGDRYTPQGDRYTPQGDRYTPQGDRYTPQGDRYTPQGE
RYHRGRGIQRGYQNNSNRYYNQSYRDNRHDHDYDNRDRNNYEQRNNYDHYNNHRRYYSYQ
NDQENRPSDEYAGLMTKKEKDWIIKIQLMQLQTDNPYLDDFYYTTYMLKKKMLERQKMQQ
NGLNNKDDDPKLIIPSLGKLETRAYKPAQFEGSLGRLTTSSVHNPRQIIDVRSHGLAVDD
SDGKNTSKELRRSRQLLMEIEKGYDLLLEVDDIEKRVLALPEESRIPLATERIELLHSLH
SYLTHENSSEHFLSVMSLRKGRKLVARVLPLLDKDLSEGLVLFLLRNLQALIKRDQKEEG
LMVLHDTVTQVLDICDLDSLVKFSKELQMESSNNQSKSVAVAIQNKFGSSVISSLLHRGE
TLYVKSSPLDLDNQLQSIWCQFVHDFAGILAVVPAESLVHPRYHHTSINDHFDRLLNKKL
VAVVEDKVKLFTQPPK
NT seq 2931 nt   +upstreamnt  +downstreamnt
atgagaatggacgaagcatacaagcagcggttaaaaactgatttccccgctatcggaggg
ggtaaatcagaccaatttagaaatgatttgatgaatgcaacagaagatgaggttgatttt
gatttgatgaatgacgaaacttttggtggagaaattgatgatgttggatttgactgggaa
gggcaaacagagaagtttgctggtgaatttgagggagcgattcccaacctctctaacaaa
accagggactctggatatgataccgtggataaaagctatcaatcccgggcggaatacctg
gagcataaccttagtcaacttgttgtggacgacgaagatgacatcgacgacccagcgatc
ctcaatgccagcaagagtcagcgcataccacacaagaaacaacagaacctggatgagatc
tttggtcctgcctccccacctggatacctagatacagagcatttggtgtcaccctccagt
aaaaacatatggggctctccagtgaaggataccaacatgccatcagccatccataacctg
caatctctctttgactttgccacaaaggctgcaacccatggcactcctagacaggattca
cctgtaatgtcaactcctgaccgacagccaatgcctgtggctgcccagatgtcaggtggt
cgtggtgctactctggaggagatagaacagcagatgatgtcacagccacgctcgataaag
aagccagtgacagcagaggagcttgagcgggagatgcgtggtgagcctttggaccagcag
gtgccccagatgccccttcatcacccacgaagcccttattctgtaccaccaaacatgcca
ccccctattccaggctctccagcctatgtgggttctccagcaggccacggacctcctaag
ttccatcacacgcctcaggcacagagagtgccaccaggtttcagccccatacaggcacaa
cacttgttggaagggaggaggtctcctctgattggtgccacaccccctttgatagggtca
cctggagtcatgggtcaacaccgagggtcaccgcagatagcaggaatgtcaggtatctct
cccattacaaggttgaccccttcacctcccctgggggcagggctacccaacctctttcac
tcaccaatacaggcacgaatgatgtccccatatgcaagaagtgccattgtgggccctatg
ggaaacaggttgcctacacaaccaattggtatcccacagcaacagctgcagcaacgcccg
ccaaccaatcagagtccatacaacaacagtccgggtggtcagctcccaccaggatcatca
ccaggagggctgtatcacagtccagggctcaaccatagtcctgcaggcccaaggggtcct
tattctggaccacctcctggggacagagggcaacatccccagggtgaacgatacacccca
caaggtgagcggggataccatcaccaaggcgatagattcactcctggagagaggggatac
ccacccaaaggtgatagatacacccctcaaggtgatagatacacccctcaaggtgataga
tatacccctcaaggtgatagatatacccctcaaggtgatagatacacccctcaaggggag
aggtaccatagaggacggggcatccaacggggataccagaacaacagcaacaggtattac
aatcaaagttatcgagataatagacacgaccatgactacgacaaccgagacagaaataat
tatgaacaacgtaacaactacgaccattacaacaaccatcgccgctactactcgtaccag
aacgaccaggagaataggccgtccgacgagtatgctggcctcatgacgaagaaggagaaa
gactggatcattaagattcagctaatgcagctacagacagacaacccctatctagatgat
ttctactacacaacgtatatgttgaagaaaaagatgttagaacgccaaaagatgcagcag
aacggccttaacaacaaggatgatgatccaaaactgatcatcccctctctaggcaagctg
gagactcgggcctacaaaccagctcagtttgaaggttctctaggtcgtctaacgacttcc
agtgtccacaatccccggcagatcatcgatgtgaggtcacatggtctggccgttgatgac
tctgatggcaagaataccagtaaggagttacgaaggtctcgacagctgctcatggaaata
gaaaagggttacgacttactgctggaggtggatgatatagagaagagagtattagcacta
ccagaggagtccaggatacctctggccactgaaaggatagaactcctgcacagcctacat
agctatcttactcacgaaaacagttccgagcatttcttgtctgtgatgtcattgaggaag
gggaggaaattggtcgcccgagttcttcctttgttagacaaggacttgtcagaaggtttg
gtcttgtttctcctgagaaatctccaagcactcatcaagagggatcagaaggaggagggc
ctgatggttctacatgacacggtcacacaagtactcgacatctgtgatctggactctttg
gtcaagttctccaaggagctacaaatggagtccagcaacaaccagtccaaatctgtggct
gtagcgattcaaaacaaatttggcagttctgtgatcagcagtctcctacaccgaggcgaa
accctctacgtcaaatcgtctcctctagacctggataaccagctacagagtatatggtgc
cagtttgtccacgactttgctggtatattggctgtggtgccggcagaatctctggtacat
cccaggtaccaccacacgagcattaacgatcattttgaccgactacttaacaagaaactt
gtcgctgttgtggaagacaaagtgaaactatttacacaacctccaaagtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (77)   
   KEGG ORTHOLOGY (1)   
   RefGene (73)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (1)   
   Pfam (1)   
All databases (88)   

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