KEGG   Mycobacterium intracellulare subsp. yongonense: OEM_44180
Entry
OEM_44180         CDS       T02732                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
myo  Mycobacterium intracellulare subsp. yongonense
Pathway
myo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:myo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    OEM_44180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:myo03021]
    OEM_44180
   03400 DNA repair and recombination proteins [BR:myo03400]
    OEM_44180
Enzymes [BR:myo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     OEM_44180
Transcription machinery [BR:myo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     OEM_44180
DNA repair and recombination proteins [BR:myo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      OEM_44180
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_45 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RnfC_N Peptidase_M23
Other DBs
NCBI-ProteinID: AGP65953
UniProt: S4ZEI8
Position
complement(4665515..4668964)
AA seq 1149 aa
MPGAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIGSPRWREAAAARGDVKPVGGLEEVLL
ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQT
VFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKLLHSVKVIPSRGAW
LEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQIHERFGFSEIMMGTLEKDNTAGTD
EALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGEPITSS
TLTEEDVVATIEYLVRLHHARTDGHPAVMTVPGGIEVPVETDDIDHFGNRRLRTVGELIQ
NQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPL
SGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARV
NPFGFIETPYRKVVDGVVTDEIHYLTADEEDRHVVAQANSPIDASGRFEESRVLVRRKAG
EVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLV
GTGMELRAAIDAGDVVVADKAGVIEEVSADYITVMADDGTRHTYRMRKFERSNHGTCANQ
SPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDV
LTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKV
TPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVN
ELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILAQEDMPFLPDGTPVDIILNTHGVPRRM
NIGQILETHLGWVAKSGWNIEGSPDWAANLPEDLLHAQPNAIVSTPVFDGAREAELQGLL
SCTLPNRDNEVMVDGDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPY
SMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKG
ENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSRN
ESASVEDLA
NT seq 3450 nt   +upstreamnt  +downstreamnt
gtgcccggagcccccaaccgagtttccttcgccaagctccgcgaaccgctcgaggttccc
ggcctgctcgacgtgcagatcgactccttcgagtggttgatcggctcgccgcgctggcgt
gaggccgcggccgcccgcggcgacgtcaagccggtgggtggcctcgaagaggtgctcttg
gagctctcgccgatcgaagacttctccggctcgatgtcgctgtcgttctccgacccgcgt
ttcgacgaggtcaaggcgccggtcgacgagtgcaaagacaaggacatgacgtacgcggcc
ccgctgttcgtcacggccgagttcatcaacaacaacaccggcgagatcaagagccagacg
gtgttcatgggcgacttcccgatgatgaccgagaagggcaccttcatcatcaacgggacc
gagcgcgtcgtcgtcagccagctggtgcggtcgcccggcgtctacttcgacgagaccatc
gacaagtccaccgagaagctgctgcacagcgtcaaggtgatccccagccgcggcgcgtgg
ctggagttcgacgtcgacaagcgcgacaccgtcggcgtgcgcatcgaccgcaagcgccgc
cagccggtcaccgtgctgctcaaggcgctgggctggaccaacgagcagatccacgagcgg
ttcggcttctccgagatcatgatgggcacgctggagaaggacaacaccgccggcaccgac
gaggcgctgctggacatctaccgcaagctgcgcccgggcgagccgccgaccaaggagtcc
gcgcagaccctgctggagaacctgttcttcaaggagaagcgctacgacctggcccgcgtc
ggccgctacaaggtcaacaagaagctgggcctgcacgccggcgagccgatcacgtcgtcc
acgctgaccgaggaagacgtcgtcgcgaccatcgagtacctggtgcgcctgcaccacgcc
cgcaccgatggccaccccgccgtcatgaccgtgcccggcggcatcgaggtgccggtggag
accgacgacatcgaccacttcggcaaccgccggctgcgcaccgtcggcgagctgatccag
aaccagatccgggtcggcatgtcccgcatggagcgggtggtccgcgagcggatgaccacc
caggacgtcgaggcgatcacgccgcagaccctgatcaacatccggccggtggtggccgcg
atcaaggagttcttcggcaccagccagctctcccagttcatggaccagaacaacccgctg
tcgggtctgacccacaagcgccgcctgtcggcgctgggcccgggcggtctgtcccgtgag
cgggccggcctcgaggtgcgcgacgtgcacccgtcgcactacggccggatgtgcccgatc
gagaccccggagggtcccaacatcggcctgatcggctcgctgtcggtgtacgcgcgggtc
aacccgttcgggttcatcgagacgccgtaccgcaaggtcgtcgacggtgtggtcaccgac
gagatccactacctgaccgccgacgaggaggaccgccacgtcgtggcgcaggccaactcg
ccgatcgacgcgagcggccggttcgaggagtcgcgcgtgctggtccgccggaaggccggc
gaggtcgagtacgtgccgtcgtccgaggtggactacatggacgtgtcgccgcgccagatg
gtgtcggtggccaccgccatgatcccgttcctcgagcacgacgacgccaaccgtgccctg
atgggcgccaacatgcagcgccaggcggtcccgctggtgcgcagcgaggcgccgctggtg
ggcaccggcatggagttgcgcgccgcgatcgacgccggtgacgtcgtcgtcgcggacaag
gccggggtgatcgaggaggtctcggccgactacatcaccgtgatggccgacgatggcacc
cggcacacctaccggatgcgcaagttcgagcgctccaaccacggcacgtgcgccaaccag
tcgccgatcgtggacgcgggcgaccgggtcgaggccggccaggtcatcgccgacggtccg
tgcaccgagaacggcgagatggcgctgggcaagaacctgctcgtggcgatcatgccgtgg
gagggccacaactacgaggacgcgatcatcctctccaaccgcctggtcgaagaggacgtg
ctcacctcgatccacatcgaggagcacgagatcgatgcccgcgacaccaagctgggcgcc
gaggagatcacccgggacatcccgaacgtctccgacgaggtgctggccgacctcgacgag
cgcggcatcgtccgcatcggcgccgaggtccgcgacggcgacatcctggtcggcaaggtc
accccgaagggtgagaccgagctgaccccggaggagcggctcctgcgggcgatcttcggc
gagaaggcccgcgaggtgcgcgacacctcgctgaaggtgccgcacggcgagtccggcaag
gtcatcggcatccgggtgttctcccgcgaggacgacgacgagctgccggccggcgtcaac
gaactggtccgcgtctacgtggcccagaagcgcaagatctccgacggcgacaagctggcg
ggccggcacggcaacaagggcgtgatcggcaagatcctggcgcaggaggacatgccgttc
ctgccggacggcacgccggtggacatcatcctgaacacccacggggtgccgcgacggatg
aacatcggccagatcctggagacccacctcgggtgggtggccaagtccggctggaatatc
gagggttcacccgactgggcggccaacctgcccgaggacctgctgcacgcgcagccgaac
gccatcgtctcgacgccggtgttcgacggcgcccgggaggcggagctgcaggggctgctg
tcctgcacgctgccgaaccgggacaacgaggtgatggtcgacggcgacggcaaggcggtg
ctgttcgacggccgcagcggtgagccgttcccgtacccggtgaccgtcggctacatgtac
atcatgaagctgcaccacctggtggacgacaagatccacgcccgctccaccggcccgtac
tcgatgatcacccagcagccgctgggtggtaaggcgcagttcggtggccagcggttcggc
gagatggagtgctgggccatgcaggcctacggcgccgcatacacgctgcaggagctgttg
accatcaagtccgacgacaccgtcggccgggtcaaggtgtacgaggcgatcgtcaagggc
gagaacatccccgagccgggcatccccgagtcgttcaaggtgctgctcaaagagctgcag
tcgctgtgcctgaacgtcgaggtgctctcgtcggacggcgcggcgatcgaactgcgcgaa
ggcgaggacgaggacctcgagcgggccgcggccaacttgggaatcaacctgtcccgcaac
gaatccgcgtccgttgaggacctggcttaa

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