KEGG   Myroides sp. ZB35: BK054_05235
Entry
BK054_05235       CDS       T04543                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
myz  Myroides sp. ZB35
Pathway
myz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:myz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BK054_05235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:myz03019]
    BK054_05235
   03016 Transfer RNA biogenesis [BR:myz03016]
    BK054_05235
Enzymes [BR:myz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BK054_05235
Messenger RNA biogenesis [BR:myz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BK054_05235
Transfer RNA biogenesis [BR:myz03016]
 Prokaryotic type
  tRNA degradation factors
   BK054_05235
SSDB
Motif
Pfam: RNB CSD2 OB_RNB OB_Dis3 S1 HTH_25 RNase_II_C_S1
Other DBs
NCBI-ProteinID: APA91625
Position
1152330..1154507
AA seq 725 aa
MAKKIKHKKSKAFDFAPKILKFLSKNTTKTYNYKQIAAQLEINDTQGRNEIIKELKHLIS
KGKIEEIETGKYKFIPKANYVEGYIDMTSRKTAYLVVEGVEDDVFIPTNNLNKALDGDFV
KAYIYNKRKGKKPEGEVVEILERHKKQFVGVIEIQKNFAFVSTADAKMYTDIFVPKEKVG
EARDGDVVVVEIEDWPEKADSPFGKVMKVLGKQGEHNTEIHAILAEYGLTAEFPKEVDEY
ANHLDTSITEEEIAKRRDMRDILTFTIDPKDAKDFDDALSFRQLENGFYEIGIHIADVSH
YVKEGTILDEEAYNRATSVYLVDRTVPMLPEVLSNFACSLRPNEDKYTFSAVFELDDKAE
IRNKWFGRTVTHSDQRMAYEEAQYIIDSKDRVIPADISLTGEDQEVSEEVADAVLKLNEL
AMIMRKNRMSDGAISFDKVEVKFNLNEEAEPVGVFFKQSKEANHLIEEFMLLANRKVSEF
IGKQKKTFVYRIHDEPDQEKLFGLQTVIARFGHNINFKSKSSISKSINKLLKDVEGKKEQ
NLVDTLAIRCMSKASYSTNNIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQHYLDHGDNV
NPELYEIKCSHCSSRENLAANAERDSIKYMQVKYMQDQQGTEFLGVISGVTEWGIYVEIV
DNKCEGMVRIREIKEDYYVFEEKQYALVGQATKKMLQLGDEVIVTVKNADLVKKQLDFNY
IKKVN
NT seq 2178 nt   +upstreamnt  +downstreamnt
atggcaaaaaaaattaaacataaaaagagtaaagcatttgactttgctccaaaaatatta
aaattcttatctaagaatacgactaaaacgtataactataaacagatcgctgcccaatta
gaaataaacgatactcaaggtagaaatgagattatcaaagagcttaaacaccttatctca
aaaggaaaaatagaagagatcgaaactggtaaatacaaattcattcctaaagcaaactat
gtagaaggttatatcgatatgacttctcgtaagactgcttatctagtagtagaaggagta
gaggatgatgtgtttattccaacaaataacctaaacaaggctttagatggtgacttcgtt
aaagcatatatctacaacaaacgaaaaggtaaaaaacctgaaggagaagtagtagaaatc
ttagaaagacacaaaaaacaatttgtgggagttatcgagattcaaaaaaactttgctttc
gtatctactgcagatgctaagatgtacacagatatattcgttcctaaagaaaaagtagga
gaggcacgcgatggagatgtagtcgtagtagaaatagaagattggccagagaaagcagat
agcccattcggtaaagtgatgaaagtacttggtaaacaaggagagcacaatactgaaata
cacgctattttagctgaatatggattaacagcagaattccctaaagaagtagatgaatat
gctaatcacttagatacttctatcactgaagaggaaatagcgaagcgtagagatatgcgt
gatattcttacgttcacgattgaccctaaagatgcaaaagacttcgatgatgccttatca
ttccgtcagttagaaaatggattctacgaaataggtattcacatcgctgacgtatctcac
tatgtaaaagaaggaactatcctagatgaagaggcttataacagagctacttctgtatat
ctagtggatagaactgtacctatgctacctgaggtgttatctaactttgcttgttcgtta
agacctaatgaagataaatatactttctctgctgtatttgaattagacgataaagcagaa
atcagaaacaaatggtttggtcgtactgtaacgcattctgaccaacgtatggcttacgaa
gaagctcagtatatcattgactctaaagacagagttattcctgctgatatctcgcttaca
ggagaagatcaagaagtaagtgaagaagtagctgatgcagtattaaagctaaatgaatta
gcaatgatcatgcgtaaaaaccgtatgtcagatggtgctatttcttttgataaagtagaa
gttaagtttaacctaaacgaagaagctgagccagtaggtgtattctttaaacaatcaaaa
gaagctaatcatttgattgaggaattcatgttattagcgaatagaaaagtatctgagttt
attggtaaacaaaagaaaacattcgtataccgtatacacgacgaaccagatcaagagaag
ttatttggtcttcagactgtgattgcacgctttggacataatattaacttcaagtctaag
tctagtatctctaaatctatcaataaacttctaaaagatgtagaaggtaaaaaagaacaa
aacttagtagatactctagcgattagatgtatgagtaaagcgagttattctacaaataat
atcggacactatggattagcgtttgattactattctcactttacatcacctattcgtcgt
tatcctgacgtaatggctcatagattattacaacactatttagaccatggtgataacgta
aatccggagttatatgaaataaaatgttctcactgttcttctagagagaacctagcggcc
aatgcagaaagagatagtatcaaatacatgcaagtgaaatatatgcaagatcagcaaggt
acagagttcttgggtgttatctcaggtgttacagaatggggtatctatgtagagatagta
gataacaagtgtgaaggtatggtgcgtattagagaaataaaagaagactattacgtattc
gaagagaaacaatatgcattagtaggacaagcaacgaaaaagatgcttcagctaggtgat
gaggttatcgttactgttaagaatgcagatcttgtaaaaaaacaattagatttcaactat
attaaaaaggtaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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