KEGG   Maylandia zebra (zebra mbuna): 101483213
Entry
101483213         CDS       T02814                                 
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
  KO
K08131  collagen type IX alpha
Organism
mze  Maylandia zebra (zebra mbuna)
Pathway
mze04510  Focal adhesion
mze04512  ECM-receptor interaction
mze04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:mze00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    101483213
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    101483213
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    101483213
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:mze00535]
    101483213
Proteoglycans [BR:mze00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   101483213
SSDB
Motif
Pfam: Collagen Laminin_G_2 Laminin_G_3
Other DBs
NCBI-GeneID: 101483213
NCBI-ProteinID: XP_012775830
Position
LG13:complement(19372405..19391031)
AA seq 925 aa
MGGIERNILLYSLCCCYVIPLCLCTGLHSQTVRFSSQVGIHLEQQSMCPQISIGEDHFPG
FYIMSQFHIAELARRGTVKKVAGPSSQNVAYQIGPAFNFRINTRSAYPLGLPEEFAFLTV
LRMSGSTVNQNWNIWQMQDVNGDEQMAVRLNGESKSLEFTFTALNGGRQTVVFSPLGFLF
NDQWHRVFLEISRDSVALFVDCVLIDSQDIPPRLEVSLNGFTLIGKLKDNPVVAVPVELQ
SMLIHCDVTRARKEECYDLPGGASTDVAEVLNNQGPPGPPGPAGVPGIDGIAGERGDDGE
DGPPGPDGDAGKPGSGGLPGIPGNDGLTGPIGDPGPDGPPGQKGEPGKPGPRGAAGVGPD
GPLGPPGPGGLPGELGKAGPPGAMGVRGPQGPRGPAGPRGASGVLGSTDLCPNSCPPGTL
GHPGLPGMKGHKGAKGEAGEPGKQGHKGAEGEQGSPGEVGAQGPRGPQGIRGAMGMMGPK
GERGPRGPDGDPGPQGVAGAAGDVGQRGVMGEPGPKGEQGAQGPRGLTGVPGPKGESGLP
GVDGREGIPGMPGAKGSVGKSGIPGEVGLQGLPGLPGVPGPKGISGPKGDSGNPGLSGAI
GSAGKLGERGEQGELGSVGPIGEPGDRGQQGPAGPAGKPGPRGPKGDPGLPGLPGPPGLP
GIKGERGDRGEPGPKGEQGVQGDEGNPGEKGDVGDSGEPGPKGEVGNPGEAGRIGPEGSR
GQPGIEGPPGTPGPRGMQGNRGPPGVRGTQGPAGKQPSDQHIKQVCMRVMQEQLTQLAAS
LRRPESGIAGLPGKPGPPGPPGPPGDNGFPGHAGSRGLPGLKGPPGQMGAKGPKGDMGDR
GARGPIVRGPKGQPGPPGLPGEPGRPGYGRDGQDGQRGPPGIPGQLGVPGPPGPAGPNGY
CDPSACNLQAGAAQQSLDVKGPAGN
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgggtggaatcgaaagaaatatcctgctctattcattgtgctgctgctatgtgatccca
ctgtgcctctgcactggacttcattcccagactgtgagattttcatctcaagttggtatt
catttggagcagcagtccatgtgccctcagatcagcattggggaggatcatttcccagga
ttttatatcatgtcacagttccacattgctgagttggcaagaaggggcactgtgaaaaag
gtggctggaccatcttctcagaatgttgcttatcaaataggcccagcattcaacttcaga
atcaacacaagatcagcctatccgcttggattgccggaggagtttgcatttttgacagtg
ctgcgcatgagtggcagcaccgtaaatcaaaactggaatatctggcaaatgcaagatgtg
aacggcgacgagcagatggccgtcaggctcaacggggaatccaagtcgttggagtttact
ttcacagcgctaaacggagggaggcagactgtcgttttcagcccactggggtttcttttc
aatgaccagtggcacagagtgttcctggaaatcagcagggactctgtggcccttttcgtg
gactgtgtcctgatcgattctcaggatattccacccagactagaagtcagccttaatggc
ttcacgttaataggaaagctcaaggataacccggtggtagcagttccggttgaactgcag
tcaatgctaattcactgcgatgtgactcgagcccggaaggaggaatgttatgacctccca
ggcggggcatcgacagatgtggcagaagtgctgaataaccaaggaccccctggcccccct
ggacctgcaggtgtcccaggaattgacggcattgctggagagaggggagacgatggcgaa
gacggtcctcctggacccgacggagatgcaggtaaacctggctctggaggattacctgga
attcctggaaatgatggtttgacaggccccattggagatcctgggcctgacggtcccccc
ggacagaaaggggaacctgggaaacctggacctcgtggagcagctggtgttgggccagat
ggaccccttgggcctccgggacctggaggacttccgggtgaattaggaaaagctggacca
cctggggctatgggtgtgagagggccacagggacctcgtggaccagcagggcccagaggt
gcttctggagtgcttggcagcactgatctgtgtcccaactcctgtccacctgggaccttg
ggacatcctggtcttcctggcatgaagggccacaaaggtgcaaagggtgaagcaggagaa
cctgggaaacaaggacacaagggcgcggagggagagcagggaagtccaggggaggttgga
gcccaaggaccgaggggacctcagggaattcgtggagctatgggaatgatgggcccaaag
ggagagaggggacctcgaggtcctgatggagatccaggtccacagggtgttgcaggggca
gctggggatgtaggccaaagaggtgttatgggtgaacccgggcctaaaggcgaacaaggt
gctcaaggaccaagaggactcacaggtgttccaggtcccaagggcgagtctggcttacca
ggtgtggatggtcgtgagggtattcctggaatgcctggagcaaagggaagcgttgggaag
tcaggcatccctggagaggttggacttcaagggcttccgggtttgcctggtgtacctgga
ccaaaaggcataagtggccctaagggagattctggtaacccaggcctttctggagcaata
ggatctgctggcaaactcggtgagcgtggagaacagggagagctgggatctgtcgggccc
attggtgagcctggagatagaggacagcaaggtcctgcaggtcccgctggaaagccaggt
ccccggggacccaaaggtgaccctggtcttcctggtctcccaggtcctcctggtctgcct
ggaataaaaggagaaaggggagatcgtggagaaccaggacccaaaggagagcaaggagtt
caaggtgatgagggaaatccaggagaaaagggggatgttggtgactcgggagaacccggc
cctaaaggggaagttgggaaccccggtgaggctggcagaataggtcccgagggaagtcga
ggacagcctggcattgaaggaccacctggcacacctggaccacggggcatgcagggaaac
agaggcccacctggagtcagaggaacacagggtcctgcgggtaaacagccaagtgatcag
cacatcaaacaagtttgcatgcgagtcatgcaagaacagctgactcagttagctgctagt
ttaaggaggccagagtctggcattgctggtttacctggaaaacctggcccaccggggcct
cctggtcctccaggagacaacggcttccccgggcatgctggctcaagaggccttccagga
ctcaaagggccaccaggacagatgggagcaaaaggacccaaaggtgacatgggagacaga
ggggccagaggacccattgttcgaggaccgaaaggtcaacctggaccacctggacttcct
ggggaaccgggaaggcctggctatggccgtgacggtcaggatgggcagaggggacctcct
ggcattcctggacagctcggtgtgcccgggcctccgggtccagccggtcctaatggttac
tgtgacccatcagcctgcaaccttcaggcaggagctgcgcagcagtccttggatgtgaag
ggacctgcaggaaactaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (59)   

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