KEGG   Necator americanus (New World hookworm): NECAME_09309
Entry
NECAME_09309      CDS       T04867                                 
Name
(RefSeq) replication factor RFC1 domain protein
  KO
K10754  replication factor C subunit 1
Organism
nai  Necator americanus (New World hookworm)
Pathway
nai03030  DNA replication
nai03410  Base excision repair
nai03420  Nucleotide excision repair
nai03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nai00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NECAME_09309
   03410 Base excision repair
    NECAME_09309
   03420 Nucleotide excision repair
    NECAME_09309
   03430 Mismatch repair
    NECAME_09309
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nai03032]
    NECAME_09309
   03400 DNA repair and recombination proteins [BR:nai03400]
    NECAME_09309
DNA replication proteins [BR:nai03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    NECAME_09309
DNA repair and recombination proteins [BR:nai03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     NECAME_09309
SSDB
Motif
Pfam: RFC1 AAA AAA_22 AAA_30 RuvB_N nSTAND3 AAA_16 AAA_14 DNA_pol3_delta NTPase_1 Zeta_toxin AAA_5 CENP-T_C AAA_19 AAA_17 AAA_assoc_2 AAA_33
Other DBs
NCBI-GeneID: 25349338
NCBI-ProteinID: XP_013302441
UniProt: W2TF39
Position
Unknown
AA seq 822 aa
MDPKQFSPQTCRYSSTWRLLSALDVSDIRSFFGGKKGGTQEEKAGTGSSHPAAKGGPSTS
HSEPTKRSHKIETNASVKKAKSSKKPSIPVVDLGDDDDSEGESPIPSSLCKPESELKRRR
RAVVSDSDDDLPLPKSSKTRVKSITPSPVKSPPKNKRSRLVVYDSDEGQSPLKKQNKIER
TPKAIQSSSDDDEMSETDSENEFVERKKTKKKDVLPAGQKKLNFEGGAKKTAPAKGGIKS
TEKLQRVTAADFFGGSGVGGGTLSSSKNKEIPKDSKVSPSQKENAPGKLGKPIKVEKELE
SSGGRGVSPKQRSDSKAGENKRKPEKKQEERKMSSQKADLKKGKAKSPLQDRGKPKTSNA
AIVEVPELLKADACVPWVDKYKPKTNSQLVGQHGDKSPYNKLFSWLKDWGRNNLGEGGKI
KKAKPPPFLAQTDGAPFKAVLLSGSPGVGKTTCAAMACESLGLKIVEMNASDVRNKKSLE
QQITQLTESHQIEEYFTSLPGRTGSEEEVKHALIMDEVDGMSGTEDRAGIAELIQIIKDT
KIPIICICNDRQHPKIRSLANHCFDLRFQKPRVEQIRARLMSIACQEKVKISKEELDQMI
ELSGHDVRQSIYNLQMYASAGGQTKVQKKDIAVGPFEAARKLLDSRSTLQEKQDMFFVDY
GIMPLFVQENYPNMRNDKHTPKQAIAGLRKAADLISLGDTIERCIRSTGTWKLLNEQVSR
RSLASCAWLSGSRESDLSLFQAMIGCALPSIAVDGHLRAMIQFPAWLGKNSTANKRQRLM
RQLAIHAHLKISADMHSLVADYVPVLRDCLTKPLLERETDGV
NT seq 2469 nt   +upstreamnt  +downstreamnt
atggatccgaagcaattcagcccacagacttgccgatactcatcgacctggaggttattg
tcagcattggatgtgtctgatatacgaagtttctttggtgggaaaaagggtggcacacag
gaggagaaggcagggacgggctcatcgcatccagctgcgaaaggtggtcccagcacttca
cattcagaacccacgaaaagatcgcacaaaatcgaaacaaacgcatcggtgaagaaagca
aaatcttcgaagaaaccaagtattcctgttgtggacctgggcgacgacgatgattcggaa
ggtgaatctccgataccttcctctttgtgcaaaccagaaagcgagctgaagcgacgtcga
cgggcggtggtttctgattccgacgatgatttgcctcttcccaaatcatctaaaactcgt
gtgaagtcaataacgccatcacctgtgaagtcccctccgaagaataagaggtcacgattg
gttgtctatgacagcgatgaaggccagtcaccgctgaagaaacagaacaaaattgaaaga
actccaaaggcgatccaaagctccagcgatgatgatgaaatgagcgagacagacagtgag
aatgagtttgtcgaaagaaagaaaacgaagaaaaaagatgtgctgccagctggtcaaaag
aagctcaatttcgaaggtggagcgaagaaaactgctccagcaaaaggagggataaagtcc
acggaaaagcttcagcgagtaactgctgcagatttttttggaggcagtggtgttggtggc
ggaacattgtcttcttctaaaaataaagagattccgaaagactcgaaagtgagcccatct
cagaaagaaaatgctcctggaaagcttggaaagccgataaaggtggaaaaggaactcgaa
agtagcggaggacgaggagtttctcctaaacaaagaagtgatagcaaagcaggcgaaaac
aagcgaaagcctgagaagaaacaagaagaacgcaaaatgtcttctcagaaggctgatctt
aaaaaaggtaaagccaagtcgccgttgcaagatcgtggcaaaccaaaaacgtctaatgct
gctatcgtcgaagttcccgaattgttaaaggctgacgcgtgtgttccctgggtggacaaa
tataagccaaaaaccaactctcagctcgttggtcagcatggcgacaagagtccttacaac
aagctttttagttggttgaaagactggggacggaacaatcttggtgaaggaggaaaaata
aagaaagccaaaccaccgccattcttagctcagacagacggtgcccctttcaaggcagtt
ttactctctggatcaccaggtgttggcaaaactacgtgtgccgcaatggcatgcgagagc
cttggtttaaagattgtggagatgaacgcatcagacgtgcgcaacaagaaatctttagag
cagcagatcacccagctcacagaatcacatcagattgaggaatatttcacatcgctgcca
ggcagaacaggctccgaggaagaggtcaaacacgccttgataatggatgaggtcgacgga
atgagtggaactgaagatcgcgcagggatagccgaactcatccagataatcaaagacacg
aaaattcctatcatttgtatctgcaatgatcgtcaacatccgaagatccgtagtttggct
aatcactgctttgatttgcgcttccaaaagcctcgtgtcgagcagatcagggcacgcctt
atgtctatagcatgtcaggagaaggtgaagatttcgaaggaagaacttgaccaaatgatt
gaattgtcagggcatgacgtgagacagtcaatctacaatctgcaaatgtacgcttccgca
ggtggacaaactaaggtgcagaagaaggacatagcagttggtccgtttgaagccgcccgg
aagcttctcgactcaaggtccactttgcaagagaaacaggacatgttctttgtggattat
ggaataatgcctttattcgttcaagagaactatccgaacatgcgaaacgacaaacataca
cctaaacaagccatagccggtcttcgaaaagctgctgatttgatctctcttggagataca
attgaacgatgtataaggtcgaccggaacatggaagttgttaaatgagcaggtcagcaga
agaagcttagcctcgtgtgcctggcttagtggaagtcgagaaagtgatctttccctgttc
caggcaatgattgggtgtgcattaccgtctattgccgttgatggtcatcttagagcaatg
attcaattccctgcttggctgggcaagaattcaacagcgaacaaaaggcaacggctaatg
cgtcaactagcgattcacgcccaccttaaaatatctgctgacatgcactcgttagttgcc
gactacgtgccagttttaagggactgtctcacaaagccgctcctcgagcgagaaaccgac
ggagtttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (17)   
   Pfam (17)   
All databases (58)   

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