KEGG   Nitrospirillum amazonense: Y958_19500
Entry
Y958_19500        CDS       T04935                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
nao  Nitrospirillum amazonense
Pathway
nao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Y958_19500 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nao03019]
    Y958_19500 (rnr)
   03016 Transfer RNA biogenesis [BR:nao03016]
    Y958_19500 (rnr)
Enzymes [BR:nao01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Y958_19500 (rnr)
Messenger RNA biogenesis [BR:nao03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Y958_19500 (rnr)
Transfer RNA biogenesis [BR:nao03016]
 Prokaryotic type
  tRNA degradation factors
   Y958_19500 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1
Other DBs
NCBI-ProteinID: ASG23616
UniProt: A0A248JYM1
Position
2:1421984..1424287
AA seq 767 aa
MPARRAADAPFPTREEIMDYIQSSPVPVGKREIARAFNITGDGRIVLKELLKELEGEGSI
EKGEGRRVAVPAALPEVAVLIVSEVTPDGEVLARPTSWAHEAPPPRIYMAAEKRGHPALA
VGDRVLARLSRQPQPGGEEDIYEGRTMRKLDSGTATRIVGIYDRARDGGRLKPVDRRAKA
EFAVADANAEGAQPGELVVAELLPASRLGLKQVRVVERLGSIEEPRAVSLIAIAQHAIPT
QFAKAAIEEAEAAPEPTVEGRTDLRDFPLVTIDGEDARDFDDAVFAEPDADPNNPGGWHL
LVAIADVSFYVRPGLALDRNAFDRGNSVYFPDRVVPMLPEALSNELCSLKPEVNRACLAV
HMWIDAQGRLKRHRFVRGLMRSVARLTYTQVQKARDGEPDELIGPLMERVITPLYGAFAV
LQKARDARGTLELDLPERLVKLDEAGTIQSIGVRPRLDSHRLVEEFMIAANVAAAEALEA
KHSPCIYRVHAEPARDKLEALRQFLGSLGYTLAKGQVMKPILFTRILNKAAETPEADLVN
TVILRSQSQALYQPENIGHFGLALPRYAHFTSPIRRYADLVVHRALVKAYGLGPGGLDEE
EAGRLAQVGEHISVTERRAATAERDALDRYVAAYLSDRVGGTFTGRIGGVTRFGLFVTLD
ETGADGLVPISTLPDDFYDHDEANHQLVGRRWGRIYRLGTIVKVRLVEADRISGSMVFAL
LGEDTDDAPWLAGGQSARKGADGKGGRARLTRKTATKARVKRPPLKD
NT seq 2304 nt   +upstreamnt  +downstreamnt
gtgccggcccgccgcgcggccgacgcccccttccccacccgggaagagatcatggactat
atccagtccagccccgtgcccgtgggcaagcgggagatcgcgcgcgccttcaacatcacc
ggcgacggccgcatcgtcctgaaggagctgctgaaggagctggagggcgagggcagcatc
gagaagggcgagggccggcgcgtcgccgtgccggcggccctgcccgaggtggcggtgctg
atcgtcagcgaagtgacgccggatggcgaggtgctggcccggcccaccagctgggcgcat
gaggcgccaccaccgcgcatctacatggccgccgagaagcgcggccatccagcactggcg
gtgggcgaccgcgtgctggcccgcctgtcgcggcaaccccagcctggtggggaagaagac
atctacgaaggccgcaccatgcgcaagctggacagcggcacggccacccgcatcgtcggc
atctatgaccgcgcccgcgacggcggccgcctgaaacccgtggaccgtcgcgccaaggcg
gaattcgccgtggccgacgccaatgcggaaggggcgcagccgggcgagctggtggtggcc
gagctgctgcccgcgtcccgcctgggcctgaagcaggtgcgggtggtggagcggctgggc
agcatcgaggagccgcgcgccgtcagcctcatcgccatcgcccagcacgccattcccacc
cagttcgccaaggcggcgatcgaggaggcggaggctgcgcccgagccgacggtggagggg
cgcaccgacctgcgcgatttccccctggtgaccatcgatggcgaagacgcgcgcgacttc
gatgacgcagtgttcgcggaacccgacgccgaccccaacaatcccggtggctggcacctg
ctggtggccatcgccgacgtcagcttctacgtccgtcccggcctggcgctggaccgcaac
gccttcgaccggggcaacagcgtctatttccccgaccgcgtcgtgcccatgctgcccgag
gcgctgtcgaacgagctgtgctccctgaagccggaggtcaaccgggcctgcctggcggtc
catatgtggatcgacgcgcaagggcgcctgaagcgccaccgcttcgtgcgcggcctcatg
cgctccgtcgcgcgcctgacctacacccaggtgcagaaggcccgcgatggcgaaccggat
gagctgatcggcccgctgatggagcgggtgatcaccccgctctacggcgccttcgccgtg
ctgcagaaagcccgcgacgcacgcggcacgctggagctggacctgccggagcggctggtg
aagctggacgaggccgggaccattcagagcatcggcgtgcgcccccgcctggacagccac
cgcctggtggaggagttcatgatcgccgccaacgtggcggcggcggaggccctggaagcc
aagcacagcccctgcatataccgcgtgcacgccgagcccgcgcgcgacaagctggaggcg
ctgcgccagttcctgggctccctgggctataccctggccaagggccaggtgatgaagccc
atcctgttcacccgcatcctgaacaaggcggccgagacgccggaagcggacctggtgaac
accgtcatcctgcgcagccaaagccaggcgctgtaccagccggagaatatcggccatttc
ggcctggccctgccgcgctacgcccacttcacctcccccatccggcgctatgccgacctg
gtggtgcaccgcgccctggtgaaggcctacggcctggggccgggcgggctggatgaggag
gaagcgggccgtctggcgcaggtgggggagcacatctcggtcaccgagcgccgcgccgcc
acggcggagcgcgacgccctggaccgctatgtcgcggcctatctgtcggacagggtgggc
ggcaccttcaccggccgcatcggcggcgtcacccgcttcggcctgttcgtcaccctggac
gagacgggcgccgatgggctggtgcccatctccaccctgccggatgatttctacgaccat
gacgaggccaaccaccagctggtgggccgccgctggggccgcatctaccgcctgggcacg
atcgtcaaggtgcgcctggtcgaggccgaccgcatctccggcagcatggtcttcgccctg
ctgggcgaggacaccgacgacgccccctggctggccggcggccaatccgcccgcaaaggg
gctgacggcaagggtggccgcgcccgcctgacccggaagaccgccaccaaggcccgcgtc
aaacggccaccgctcaaggattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (48)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (60)   

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