KEGG   Neisseria animalis: D0T90_05050
Entry
D0T90_05050       CDS       T06425                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
naq  Neisseria animalis
Pathway
naq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:naq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    D0T90_05050 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:naq03021]
    D0T90_05050 (rpoC)
   03400 DNA repair and recombination proteins [BR:naq03400]
    D0T90_05050 (rpoC)
Enzymes [BR:naq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     D0T90_05050 (rpoC)
Transcription machinery [BR:naq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     D0T90_05050 (rpoC)
DNA repair and recombination proteins [BR:naq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      D0T90_05050 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: QEY23941
UniProt: A0A5P3MT29
Position
1053150..1057328
AA seq 1392 aa
MNLANLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLQRRQLLTEDDYYNKLDEYGDDFDA
KMGAEGIRELLRTLDVAGEIEVLRQELESTGSDTKIKKIAKRLKVLEAFHRSGMKLEWMI
MDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELHAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVWDILEEVIRE
HPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDRINGKGEGSLFADVKEVHRAYH
TKQVELGTKITVRLREWVKNEAGEFEPVVNRYETTVGRALLSEILPKGLPFEYINKALKK
KEISKLINASFRLCGLRDTVIFADHLMYTGFGFAAKGGISIAVDDMEIPKEKAALLAEAN
AEVKEIEDQYRQGLVTNGERYNKVVDIWGRAGDKIAKAMMDNLSKQKVIDREGNEVEQES
FNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRDR
ILGRVTASDVVDPSSGETLVEAGTLLSEQLVDLIDQSGVDEVKVRTPITCKTRHGLCARC
YGRDLARGKLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTA
RFSSQMRYVANNKGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGAAIKAGQTL
ATWDPHTRPMITEHAGSVKFENVEEGVTVAKQTDDVTGLSTLVVIDGKRRSASASKLLRP
TVKLLDENGLEICIPGTSTPVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITG
GLPRVAELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIITDVDGAAYETLISKEKQIL
VHDGQVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVII
RQMLRRVNIADSGDTPFITGEQVERGDVMIENEKAIAEGKEPARYENVLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQPVE
AENTEQAEDTAE
NT seq 4179 nt   +upstreamnt  +downstreamnt
atgaatttggcaaatttattcaatccgctgcaaaccgccggcatggaagaagagtttgac
gccatcaaaatcggtattgcctctcccgagacaatccgttcttggtcttacggcgaagtg
aaaaagccggaaaccatcaactaccgtacattcaagccggagcgcgatggtttgttctgt
gccaagattttcggcccggtaaaagactacgaatgcttgtgcggcaaatataagcgcttg
aaattcaaaggcgtaacctgtgaaaaatgcggcgtggaagtaaccttgtccaaagtgcgc
cgcgagcgtatgggtcatatcgagttggcggcgcctgtcgcacacatctggttcttgaaa
tccctgccgtcccgtctgggcatggtattggacatgaccctgcgcgacatcgagcgcgta
ctgtatttcgaggcatttgtcgtgaccgatccgggcatgacaccgctgcaacgccgccaa
ctgctgactgaagacgattactacaataagctcgacgagtacggcgatgatttcgatgcc
aagatgggtgcggaaggtatccgcgaattgctgcgtactttagatgtggcaggtgaaatc
gaagttttgcgccaagagttggaatctaccggctctgataccaaaatcaagaaaattgcc
aaacgtctgaaagtattggaagcattccatcgttcgggcatgaaattggaatggatgatt
atggacgtgctgccggtattgcctccggacctgcgtccgttggtaccgctggacggcggc
cgtttcgctacttccgatttgaatgatttgtaccgccgcgtcatcaaccgcaacaaccgt
ctgaaacgcctgctcgaactgcacgcgcccgacattattgtgcgtaacgaaaaacgtatg
ctgcaagaagcggtggacagcctgctggacaacggccgccgcggtaaagccatgaccggt
gccaacaaacgtccgctgaaatcattggcagacatgattaaaggtaagggcggccgtttc
cgccaaaacctgttgggtaagcgcgtggactactcaggccgttctgtgattactgtcggt
ccttacttacgcctgcaccaatgcggcctgccgaaaaaaatggcattggagctgttcaaa
ccgtttattttccacaaattggaaaagcaaggcttggcttctactgttaaggccgccaaa
aaactggtggagcaagaagtgccggaagtatgggatatcttggaagaagttatccgcgaa
catccgattatgctcaaccgtgcgccgactctgcaccgtttgggtattcaagcgtttgag
ccgattctgatcgaaggcaaagccatccagctgcatccgttagtgtgtgccgcattcaat
gccgacttcgacggtgaccaaatggccgttcacgttccattgagcctcgaagcgcaaatg
gaggcgcgtacgctgatgctggcttcaaacaacgtattgtctccggccaacggcgaaccg
attatcgtaccttcgcaagatatcgtattgggcctgtactacatgacccgcgaccgcatt
aacggtaaaggcgaaggcagcttgtttgccgatgtgaaagaagtacatcgtgcctaccat
accaaacaagtggaattgggtacgaaaatcaccgtccgcttgcgcgagtgggtaaaaaat
gaagcaggcgaatttgaaccggtagtcaaccgttatgaaaccacagtcggccgggctttg
ctgagcgagattctgccgaaaggcctgccgtttgaatacatcaacaaagcattgaagaag
aaagaaatttccaagctgattaatgcttcgttccgtttgtgcgggctgcgtgataccgtt
atcttcgccgaccatttaatgtataccggtttcggttttgctgccaaaggcggtatctcg
attgccgtggacgacatggaaatcccgaaagagaaagccgcattgttggcagaagccaat
gccgaagtgaaggaaatcgaagaccaataccgccaaggtttggtaaccaacggcgaacgc
tacaacaaagtagtggatatctggggtcgtgccggcgataaaattgccaaagcgatgatg
gacaacttgtcgaaacaaaaagtaatcgaccgcgaaggcaatgaagtcgaacaagagtcg
ttcaactccatctacatgatggccgactccggtgcgcgtggttctgctgcccagatcaaa
cagctttccggtatgcgcggcttgatggccaaaccggacggttcgattatcgaaaccccg
attacctccaacttccgcgaaggcctgaccgtattgcaatactttattgcgacccacggt
gcgcgtaaaggtctggcggataccgcgttgaaaaccgcaaactccggttatctgacccgc
cgtttggtggacgtaacccaagacttggttgtggtagaggacgattgcggcacttcagac
ggctttgtcatgaaagcagtcgtacaaggcggtgacgtaatcgaagcgctgcgcgaccgt
atcttaggccgcgtaactgcttccgatgtcgtcgatccgtccagcggcgaaacattggtt
gaggcaggtacgctgctgagcgagcaattggttgatttgattgaccaatccggtgtcgat
gaagtgaaagtccgcaccccgattacctgtaaaacccgtcacggtttgtgcgcccgttgt
tacggacgcgacttggcgcgcggcaaactggtcaatgccggcgaagcagtcggcgtgatt
gcagcccagtccatcggcgaaccgggtacccagctgaccatgcgtaccttccacatcggt
ggtgcggcctcccgtgccgcagcagccagccaagtggaagccaaatccaacggtacggcg
cgtttcagcagccaaatgcgctatgtcgccaataacaaaggcgaactggtggtgattggc
cgctcttgcgaagtcgtcattcatgacgacatcggccgcgagcgcgaacgtcataaagta
ccttacggcgcgattttgctggtacaagacggcgcagccatcaaagcaggccaaactttg
gcaacatgggatccgcatacccgtccgatgattaccgaacatgccggttcggtgaaattc
gaaaacgtagaagaaggtgtaaccgtagccaaacaaaccgacgatgtaacaggcctgtct
acattggtggttatcgacggcaaacgccgttcggcatccgcttccaaactgttgcgcccg
acagtgaagctgctggacgaaaacggcttggaaatctgtatcccgggaacttcgacaccg
gtatccatggccttccctgtaggagccgtgattaccgtgcgcgaaggacaggaaatcggt
aaaggcgacgtattggcgcgtatcccgcaagcctcttccaaaacccgcgatattaccggc
ggtctgccgcgtgtggcagaattgttcgaagcacgcgtacccaaagatgccggtatgctg
gcagagattaccggtaccgtatccttcggcaaagaaaccaaaggcaagcaacgcttaatc
attaccgatgtagatggagctgcttatgaaaccttgatttctaaagagaagcagattctg
gtgcatgacggccaagtcgtaaaccgaggcgaaaccatcgttgacggagcggttgacccg
cacgatatcctgcgtctgcaaggcatcgaagcattggcacgttacatcgtacaagaggta
caagaagtgtaccgtctgcaaggtgtgaagatttccgacaaacacatcgaagtcatcatc
cgccaaatgctgcgtcgtgtgaacatcgccgactcgggcgataccccgttcatcaccggt
gagcaagtcgagcgcggtgacgtgatgattgaaaacgagaaagccattgccgaaggcaaa
gagcctgcgcgttatgaaaacgtattgctgggtattaccaaagcatcgctttctaccgac
agctttatctcggccgcatcgttccaagaaaccacccgcgtgcttaccgaagccgcgatt
atgggcaaacaggacgagttgcgcggtttgaaagaaaacgtgattgtaggccgtctgatt
cctgccggtaccggtctgacctaccaccgcagccgccatcaacagtggcagccggttgag
gcagaaaataccgagcaggcagaagataccgcagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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