KEGG   Novosphingobium aromaticivorans: Saro_1997
Entry
Saro_1997         CDS       T00322                                 
Name
(GenBank) UvrD/REP helicase
  KO
K16898  ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
Organism
nar  Novosphingobium aromaticivorans
Brite
KEGG Orthology (KO) [BR:nar00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nar03400]
    Saro_1997
Enzymes [BR:nar01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Saro_1997
DNA repair and recombination proteins [BR:nar03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    AddAB pathway proteins
     Saro_1997
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PDDEXK_1 UvrD_C_2 DEAD AAA_30
Other DBs
NCBI-ProteinID: ABD26436
UniProt: Q2G6T7
Position
complement(2126345..2129830)
AA seq 1161 aa
MSKVYPLKENQAHAVHPQRTVWLSASAGTGKTQVLSARVLRLLLQDGVEPEQLLCLTFTK
AGAAEMATRVNEVLASWVRLPEIELAQQLRAIGAPFDPGTVARARSRFAAVLDCPGGGLR
IETIHAFCQWLLASFPVEAGLRPGTRAMEDRDRALLVRQVLAEMLVEAGERGDEELLDAL
ATLSRRMSEDQVEAFLLRCASARDLWWGAGSWTPPLRPRINRALGLGEDAGVAALAALCA
EDAFDCQSVRRCMEMNAAWGTKGGIENANALGDWLSATPSRRLETIALLEACFLTAKGEP
RSTTNIEKKQPDYPGYASRVIACIEALRAERAKIDLADLLETALGVGRRFALAWDAAKTR
EGFIDFDDQIRTAAELLTRRTTAEWIRFKLDRRFDHILVDEAQDTNASQWQIVLEGLVSD
FFTGEGQRGPAVRTLFVVGDYKQAIFGFQGTSPENFARASIRVKEQLAEVSAILRDPERE
LLELGLGQSFRTAAPILGFVDAAIGRIGWDRFGLSQMPEQHKGLPIPGTVGLWRVVGDDA
GEPGEDGEDTDEGEEGWLSRPDRELADRIARQVRAWIDVGFPLGKGDTPRLANAGDVMIL
VRKRKELAGLIVARLHARGVPVAGVDRLRLGAPLAVKDLVAALRFAAQPLDDLNLAGLLV
SPLIGWSQEDLLERGYRPHGERLWEWLRRNEGPETFEMMERLRALLARADFDPPQVLLHW
LLVGPWDGRRKLVARLGGEANDPIDELLNAAMAYASANVPSLVGFLQWFDAGEGELKREA
GKSDGLVRVMTVHGSKGLQAPIVILADAADDPDLSPPRGLEIVEDVMGARRKVPLPPLRK
EEKAPAVIEAEAEAKRAEREEHWRLLYVAMTRAEEALFIAGAKGKVRRTSGGELPVDSWY
AQLEPLFGDGEWEVDPLWGGRKTIGRPQDFVGRPAQADVSPVRAALPQVLLTPVGAEPRP
PRPLAPSSLGEDEASEPPTHPGPGAMIAARRGTLLHRLIERLPEVSPASREASGMAWLAR
AGSDFDEAERSAMVRSALAVLNHPEWSDVFGPDSLAEVPLAAVVAGRVVSGTVDRLVIGR
ERVRIVDFKTARRPPASFTEVPAAYVRQMAAYVAALEAIHPGVPVEAALLYTHTPQLFVV
PQEVIAAQKLRLAGQQESFSA
NT seq 3486 nt   +upstreamnt  +downstreamnt
atgagcaaggtctacccgctcaaggaaaaccaggcccatgcggttcatccgcagcgcacg
gtgtggctgtccgcgtcggccggcaccggcaagacccaggtgctttccgcccgcgtcctg
cggctgcttttgcaggatggcgtagagcccgaacagcttctctgcctgactttcaccaag
gccggcgccgccgaaatggccacacgcgtgaacgaggttctggcaagctgggtccggttg
ccggaaatcgagcttgcccagcaactgagagccatcggcgcgccgttcgatccgggcacc
gtggcgcgtgcccgcagccgctttgccgccgttctcgattgccccggcggcggattgcgg
atcgagacgatccacgccttctgccagtggctgctggcctctttcccggtggaagcaggt
ctgcggcccgggacccgcgcgatggaagaccgcgaccgcgcgctgctggtgcggcaggtt
ctcgccgaaatgctcgtcgaagccggggaacgtggcgacgaggaactgctcgacgcgctg
gcgacgctttcgcggcggatgagcgaggatcaggtagaagccttcctcctgcgctgcgcc
tcggcgcgggacctgtggtggggggccggctcctggaccccgccgctgcggccgcgcatc
aaccgcgcgcttgggttgggcgaggatgcgggcgtcgccgcgcttgccgccctttgcgcc
gaagacgcgttcgattgccagtcggtccgtcgctgcatggagatgaatgctgcatggggg
accaagggcgggatcgagaatgcgaacgcgcttggagactggctgtcggcaacgccgtcg
cgccgtctggagacgatcgcgctgcttgaagcctgcttcctgacggccaagggcgaaccg
cgctcgaccacgaacatcgagaagaagcagccggactatcccggttacgcatcgcgggtg
atcgcctgcatcgaggcattgcgagccgagcgggcgaagatcgaccttgccgacctgctc
gaaaccgcgcttggcgtcggtcgccgcttcgcgctggcgtgggacgcggcgaagacccgc
gagggcttcatcgatttcgacgaccagatccgcaccgccgccgaactgctgacccggcgg
acaactgccgagtggatacgtttcaagcttgaccgccgcttcgaccatatccttgtcgac
gaggcgcaggacaccaacgcctcgcagtggcagatcgtgctggaaggcctcgtatcggac
ttcttcaccggtgaaggccagcgcggccccgcagtgcgcacgctgttcgtcgtgggcgac
tacaagcaggcaatcttcggcttccagggtaccagcccggaaaacttcgcccgcgccagc
attcgcgtgaaggagcagcttgccgaagtctcggcgatcctgcgcgatccggagcgcgaa
ctgctcgaacttggcctgggccagtccttccgcaccgccgcgccgatcctcgggttcgtc
gatgcggcgatagggcggattggctgggaccgattcgggttgagccagatgccggagcag
cacaagggcctgccgatccccggaaccgtggggctttggcgggtggtcggcgacgatgcg
ggcgaaccgggagaggacggcgaggacacggacgaaggcgaggaaggctggctttcccgc
ccggaccgcgaactcgcggatcgtatcgcccggcaggtgcgggcgtggatcgatgtcggt
tttccgctgggcaagggcgacacgccgcgactggcgaacgccggcgacgtgatgatcctt
gtccgcaagcgcaaggaactggccgggctgatcgttgccaggcttcatgcgcgcggcgtg
cccgttgcgggcgtggaccggctacggctcggcgcgccgctggcggtcaaggatctggtc
gcggcattgcggtttgccgcgcagccactcgatgacctgaaccttgccgggctgctggtg
tcgccgctgatcggatggtcgcaggaagacctgctcgaacgcggctatcgcccccatggc
gaacggctgtgggaatggctgcgtcgcaacgaggggccggaaacgttcgagatgatggaa
cggctgcgcgccctgttggcgcgggccgatttcgatccgccgcaagtcctgctgcactgg
ctgctggtggggccctgggatggccggcgcaagctggtggcgaggcttggcggcgaggcc
aacgatccgatcgatgaactgctcaacgccgcgatggcctatgccagcgcgaacgtgcca
agccttgtcgggttcctccagtggttcgatgccggcgagggcgagttgaagcgcgaagct
ggcaagagcgacggccttgtgcgcgtgatgacggtccatggatcgaaagggcttcaggca
cccatcgtgatcctggccgacgcggcggacgatccggacctatcgcctccgcgcggcctc
gaaatcgtcgaggatgtcatgggcgcgcgccgcaaggtgccgctgccgccgctccgcaag
gaggagaaggctcccgccgtgatcgaggccgaggccgaggccaagcgggccgagcgcgag
gagcattggcgcctgctttacgtggccatgacccgggctgaagaagcgctgttcatcgcc
ggggccaagggcaaggtgcggcggacgagcggcggcgaacttccggtcgatagttggtac
gcgcaactcgaaccgctgttcggcgatggcgagtgggaagtcgatccgctgtggggcggg
cgcaagaccatcggtcggccacaggatttcgtcgggcgccctgcacaggcagatgtctcg
ccagtccgggcggcactgcctcaggtgttgctgacgcccgtgggtgccgaaccgcgtccg
ccacggccgcttgcgccatcgtcgcttggcgaggacgaagcgtccgagccgcccacacat
cccgggccgggagcgatgatcgctgcgcggcgcgggaccttgctgcaccgcctgatcgag
cgcctgcccgaagtctctccggcgagccgggaagcgtcgggtatggcatggctggcgcgg
gccggcagcgatttcgacgaggcggagcgttcggcaatggtgcgttccgcgcttgcggtg
ctcaatcatccggagtggtccgacgtgttcggtccggattcgcttgcggaggttccgttg
gcggcagtggtcgcgggacgcgtggtcagcgggacggtcgaccggctggtcatcggacgt
gagcgggtccgtatcgtcgatttcaagaccgcgcgcaggcccccggcgagttttacggag
gtgcccgccgcctatgtccggcagatggcggcctacgttgccgcgcttgaggccatccat
cccggcgtaccggtcgaggcagcgctactctatacccacacgccgcagcttttcgttgta
ccgcaagaggttatcgccgcgcaaaagctgcgccttgccggacagcaggaatccttttcc
gcatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (45)   

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