KEGG   Nicotiana attenuata (coyote tobacco): 109207334
Entry
109207334         CDS       T05870                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1 isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109207334
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nau03021]
    109207334
Enzymes [BR:nau01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     109207334
Transcription machinery [BR:nau03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     109207334
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 109207334
NCBI-ProteinID: XP_019225778
UniProt: A0A314KUM4
Position
Unknown
AA seq 2036 aa
MEENSSSKVADGTIRGITFGLATPQEICKSSISDCPITHPSLLLNPFLGLPLEAGRCESC
GTAEPGQCEGHFGYIELPIPIYHPDHVSELKKMLSLLCLKCLKMKNRKVQVKHVGVLERM
LPSCCEDVVQISINEGKTSDGASYLELKVPKNAANLPDWNFLEKYGYRYGDGYSRPLLPS
EVLTILKRIHEDTRKKLSAKGYFPQEGYILQYLPVPPNCLSVPDISDGNNIMSSDHSITM
LRKVLRQIDIIKSSRSGIPNFEAHEVEANDLQASVVQYLQFRGTGKASRDVDKRFGTNKE
AADTTTKAWLEKMKTLFIRKGSGFSSRSVITGDPYKGVGEIGLPCEIAQKITFEERVSQH
NMAYLQKLVDEKLCLTYKDGSSTYSLREGSKGHTFLRPGQIVHRRIMDGDTVFVNRPPTT
HKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVVELFSVGKQ
LLSSHTGNFNLQLATDSLLSLKLMFSKYFFDREAAQQLAMFLQMALPDPALVDVRKSGTM
WTALQILGTALPDGLDSCGETHTIGKSQFLGIEYNKDLLSSILNDVITSIYFMKGPNDVL
KFFNSLQPLLMENLCTEGFSVSLRDFYTSKTVRNGIQERVQCMSKLLHHLRSSYNESVEV
QLEHHLRNEKLPVIDFVHKSSGIGVLIDSKSESALNKVVQQIGFLGMQISDRGKFYSKTL
VNDMARLFQKKYPSAGSNPSEEFGLVGSCLFYGLDPYQEMIHSISSREVIVRSTRGLTEP
GTLFKNLMAILRDVLICYDGTVRNVSSNSIIQFEYGASGGSNFPSEFGAGDPVGVLAATA
MSNPAYKAVLDSSPSSNSSWEMMKEILLCGVSFKNDVSDRRVILYLNDCGCRRGCCREKA
AYLVKNHLSKVCLKDAADEFLIEYGGQPAGYENSETGTGLVGHITLNQGQLENLGISVLE
VLERCQENISSFQRRKKIGNLFKRIVLSVSEFCSFCYNSGSKCLKTPCLRFSWPDASDDH
LERVSHILADMICPILLDTVIKGDPRVSSANIVWISPDTMTWIRNPSKSQSGELALDIVL
EKEAVKQRGDAWRILMDSCLPFIHLIDTRRSIPYAIKQVQELIGISCAFEQAVKRLSTSV
TMVTKGVLKDHLVLLANSMTCAGNLIGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFER
AAEKCHVDSLSSIVASCSWGKHVAVGTGSPFEVLWNTKNVELNIPDAHDVYSFLHLVRSS
SAQEVEGTSCLGAEVEELEVEDDDMGLYLSPERDSGSDKPTFEDRAEFDNGIENENLDEG
KLSGSAWEKASSENVKSGGSWDMAKTQNGAEKAVNQSDSWSSWGRKVDEAENNPRESGNG
EQLESWSAWGGKAKEVDSNPQQSGNTAQSGSWSAWGKKVDETGNSPRQSGNEEQSGSLSS
WGKKVEKDGGSWGKQSGNTAQSGSWSAWGKKVDEAGNSPRQSGNEEQSGSLSSWGKKVEK
DGGSWGKKVEETENHNHQSGKDEKSGSLSSWGKKVEKDGDSSWGKKVEIDGGSSWGKKVE
IDGGSSWGKKVEEAENHSHRSGKEEKSESLSSWGKKVENNGVSSWGKKVENDGVSSWGKK
VEKDGGSWGKKVEQAEIHSHQSGKEEKSESLSSWGKKVEKDGSWGKKVEKDGGSSWGGKV
EAENTPRPSGKGEQSGSWSSWGKQVKEDGGASWGKKVEKDGGSSWGKKVDEPEDKPHQSG
NGEQSGSWSSWGKKVEKDGGSWGGPKQSNSESSWGKTTKGGGFGSAAAEGNRRVDQLVNG
WSSSISGDEQLNEPTSDDATKVGGWNSSTVGGWNSQKVGVEESDKQPQWGQRRRNPRGDF
RDNSRGWGSSSGGEWKGNRPARSADDSNRGGNFTATRQRMDIFTAEEQDILSNVDPIMLN
IRRIMHQTGYNDGDPLSADDQSYIIDTVLNYHPDKAVKMGAGLDYITVSKHTEFQDSRCF
YVVSTDGAKQDFSTRKCLENFVRSKYPDKAETFNGKYFKKPQPRSTRNASPSPSVG
NT seq 6111 nt   +upstreamnt  +downstreamnt
atggaggaaaattcgtcatctaaagtagcggatggaactattagaggtatcacattcggt
ttggcgacaccacaggaaatatgtaaatcctctattagtgattgccccattacccatccc
agcttacttctcaacccttttcttggtctgcctctcgaagctggcagatgtgaatcctgt
ggtactgcagagcctggacaatgtgaaggtcattttggatacattgagttgcccattcct
atttatcaccctgaccatgtcagtgagttgaaaaagatgctaagcctgctttgcttgaag
tgtttaaagatgaaaaacagaaaggttcaggtcaagcatgtcggtgttcttgaacgaatg
ttgccctcatgttgtgaggatgtcgtacaaatctcaataaatgagggtaaaacctcagat
ggtgcttcctatttggaactgaaagttccaaaaaatgctgcaaatcttccggactggaac
ttcttggagaaatatggctaccgctacggtgatggttattctcgacctttgcttccttct
gaggttcttacaattctgaaaagaattcatgaagatactaggaaaaagctgtcagcaaaa
ggctatttcccacaggagggatacatcctgcaatacttaccagtacctcctaactgtttg
tctgtgcctgatatatctgatgggaataatatcatgtcttcggatcattctataacaatg
ctcaggaaggtactgaggcagattgacataattaaaagttcaagatctggtatacctaat
tttgaggctcatgaagttgaagccaatgatttacaagcatcagttgtccagtatctccag
tttagggggacaggcaaggcatctcgtgacgttgataaacgttttggaacaaacaaggaa
gcagctgataccaccactaaagcctggttggagaagatgaagaccttgtttatcaggaag
gggtctggtttctcgtctcgaagtgtcataactggtgacccatataaaggggtgggtgag
attggtttgccatgtgaaattgctcagaaaattacttttgaggagagagtaagtcagcac
aatatggcatatttacagaaattggtggatgaaaagctttgtttaacctataaagacggg
tcaagtacttactctttgagagaagggtcaaaggggcacacatttctacgacctggacaa
atagtgcacaggaggataatggacggtgataccgttttcgttaataggccacccacaaca
cacaagcactccctccaagccttatcagtgtatgtccatgatgatcacactgtaaagatc
aaccccctcatatgtggtccccttagtgctgattttgatggggactgcattcatttgttt
taccctcagtcccttgctgccaaagcagaggttgtggagctcttctctgtagggaaacag
ttactgagttcacacactggtaacttcaatttgcagcttgccactgactcattgctgtca
ttgaagttaatgttctcaaagtatttcttcgatagagaagctgcccaacagttagcaatg
tttcttcagatggccttacctgatcctgcactagtagatgttcgtaaatcaggtaccatg
tggactgccttacagatcttggggactgccttacctgatggccttgatagttgtggggag
acacatacaattgggaaaagtcagttcttggggattgagtacaacaaggacttgctttca
tccattctgaatgatgttatcacatctatctattttatgaaggggccaaatgatgtgctg
aagtttttcaattctttacaacctctattaatggagaatctgtgcacagaaggttttagt
gttagtctccgagatttttacacgtcaaagactgttaggaatggtatccaggaaagagtt
cagtgcatgtccaagttgttgcatcacttgcggtcatcctataatgagtctgtggaagta
caattagaacatcacttgcgtaatgagaaacttccagttattgactttgtgcacaagtca
tctggcatcggtgttctaattgattccaagagtgaatctgcgcttaataaggtggttcaa
caaattgggtttttaggcatgcaaatatccgacagaggaaaattttactcaaaaacattg
gtaaatgacatggctcgactgtttcagaagaagtatccttctgctggtagtaacccttcg
gaggaatttgggttggttggaagctgtctgttctacgggttagacccttatcaggagatg
attcattcgatctctagtagagaagtgattgttcgctcaacaaggggattgaccgaacct
gggactttgttcaaaaacttgatggccatcctccgtgatgtgctaatttgctatgatggg
actgttcggaatgtctccagcaattccattattcaatttgagtatggggctagtggtggg
tcaaatttcccaagtgaatttggtgctggtgatcctgttggagtgttggctgcaactgct
atgtccaatcctgcatacaaagcagttcttgattcctctccgagcagcaattcctcctgg
gagatgatgaaggagatactgctttgtggagtgagcttcaagaatgatgtttctgaccgt
cgggtaatcctttatctgaatgattgtgggtgccgtagagggtgctgcagagaaaaagca
gcgtacctcgtcaagaatcatttgagcaaagtatgtcttaaggatgctgctgatgagttc
ttgatagaatatggagggcaaccagcaggatatgagaattctgaaacagggactggcctc
gttggtcatattactctcaaccagggacagctggaaaatctgggaatcagtgttcttgag
gttcttgaaagatgccaagaaaatatcagttcattccagaggagaaaaaagattggcaat
cttttcaagagaatagttttgtcagtgagtgaattttgttcgttttgctacaattctgga
agcaagtgtttgaaaacaccatgcttgaggttctcttggccagatgcgagtgacgatcac
ttagagagggtttctcacattcttgctgatatgatatgcccaattctgttggatacagtt
atcaaaggtgatccaagggtttcaagtgcaaatatagtttggatttctcctgacacaatg
acttggattaggaacccgtccaagagtcaaagtggtgaattagctctggatattgttctc
gaaaaagaagctgttaagcaaagaggagatgcttggaggattctcatggactcctgtctt
cctttcatccatttgatagacactaggcgctccatcccatatgcaataaagcaagtccaa
gaactgattggaatttcttgtgcctttgagcaagctgttaagcgcctatcaacgtcagtt
acaatggtcacaaagggtgttctcaaagaccacctagttctattggctaatagcatgact
tgcgcaggaaatctgattggttttaatgctggtggaataaaagcattgtctcgttcatta
aacgtgcagataccatttacggaagcaacgttatttaccccaagaaaatgttttgagagg
gctgctgaaaagtgccatgttgattctttgtcaagcattgtggcttcttgctcctgggga
aaacatgtggcagttggtacaggatctccatttgaagttctctggaacacaaaaaatgtt
gaattgaatataccggatgcacatgatgtttatagcttcctgcacttggtgaggagcagc
tctgctcaagaagtagaaggtaccagttgtcttggtgcggaagttgaagaactggaggtg
gaagacgacgatatgggattatacttgtctcccgagcgggactctggttcagataagccc
acttttgaagatagagctgaatttgataatggtatagaaaatgaaaacttagatgaagga
aagctaagtggctctgcatgggagaaggcatcatctgagaatgtcaaatctggtggtagc
tgggatatggctaaaacccaaaatggcgctgaaaaggctgtcaatcagtcagattcctgg
tcttcttggggcagaaaggttgatgaagctgagaataatcctcgtgaatctgggaacgga
gagcagctagaatcatggtctgcctggggaggaaaggctaaggaagtggacagtaatcct
cagcaatccgggaatacagcgcagtcagggtcatggtcagcatgggggaaaaaggttgat
gaaactgggaatagccctcgccagtccgggaatgaggagcagtcaggatctttgtcctcc
tgggggaaaaaagtggaaaaagatggtggttcatggggtaagcaatccgggaatacagcg
cagtcagggtcatggtcagcatgggggaaaaaggttgatgaagctgggaatagccctcgc
cagtccgggaatgaggagcagtcaggatctttgtcctcctgggggaaaaaagtggaaaaa
gatggtggttcgtggggtaaaaaggttgaggaaacggaaaatcataatcaccaatctggg
aaagatgagaagtcaggatctttgtcctcatgggggaaaaaggtggagaaagatggcgat
tcctcttgggggaaaaaggtggaaattgatggtggttcgtcttgggggaaaaaggtggaa
attgatgggggttcttcttgggggaaaaaggttgaggaagcagaaaatcatagccaccgg
tctgggaaggaagagaagtcagaatctttgtcctcatggggaaaaaaggtggaaaacaat
ggtgtttcttcttgggggaaaaaggtggaaaacgatggtgtttcttcttgggggaaaaag
gtggaaaaagatggtggttcctggggtaaaaaggttgagcaagcggaaattcatagtcac
caatctgggaaggaagagaagtcagaatctttgtcctcgtgggggaaaaaggttgaaaaa
gatggttcttgggggaaaaaagtggaaaaagatggtggttcttcttggggaggaaaggtt
gaagctgagaataccccacgaccatctgggaaaggagaacagtcaggatcttggtcctca
tgggggaaacaggtgaaagaagatggtggggcttcttgggggaaaaaggtggagaaagat
ggtgggtcttcttgggggaaaaaggttgatgaacccgaggataagcctcaccagtctggg
aatggagagcagtcaggatcttggtcctcgtggggtaaaaaggtggaaaaagatggtggt
tcatggggcggacctaaacagtcaaattctgagtcgtcttggggaaaaactactaaaggt
ggtggatttggttcagcggctgctgaaggcaatagaagggttgaccagttagttaatgga
tggagctctagtataagcggagatgaacagttaaatgaaccaactagtgatgacgctaca
aaagttggtggttggaattcttcaacagttggtggttggaattctcagaaggttggtgtt
gaagagagtgataagcaacctcagtggggtcagcgcagacgtaatccaagaggagatttt
agggataattcacgaggttggggctcttctagtggtggagagtggaagggcaaccggcct
gcaagatcagctgatgactccaatagaggtgggaattttacagcaacaaggcaaaggatg
gatatattcacagcagaggaacaagacatactttcaaatgttgatcctattatgctgaat
atcagaagaataatgcatcagacagggtacaatgatggtgacccattatctgctgatgac
cagtcatacatcattgacactgttctcaattaccatccggataaagctgtcaagatggga
gctggtcttgattatatcacggttagcaaacataccgagttccaggacagtagatgcttc
tacgttgtttctactgatggtgctaagcaagatttctccacccggaaatgtctggagaac
ttcgtcaggtcaaagtatcctgataaggctgagactttcaatggcaagtatttcaaaaag
cctcaacctcgcagcactagaaatgcatctccatctccatcagttggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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