KEGG   Nicotiana attenuata (coyote tobacco): 109207778
Entry
109207778         CDS       T05870                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03020  RNA polymerase
nau03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109207778
  09124 Replication and repair
   03420 Nucleotide excision repair
    109207778
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nau03021]
    109207778
   03400 DNA repair and recombination proteins [BR:nau03400]
    109207778
Transcription machinery [BR:nau03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     109207778
DNA repair and recombination proteins [BR:nau03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109207778
SSDB
Motif
Pfam: RNA_pol_Rpb4 TRF IL5
Other DBs
NCBI-GeneID: 109207778
NCBI-ProteinID: XP_019226308
Position
Unknown
AA seq 138 aa
MSLEEEENAAELKIGDEFLKAKCLMNSEVSLILEHKYEQIQQMSDDPSNQVSQVFEKSLQ
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKNRGRTLD
EEAIEKMLNDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtctttggaagaagaagaaaatgcagccgaactcaaaattggcgacgagtttttgaag
gccaagtgtctaatgaactctgaagtttctttgattcttgaacacaagtatgagcagatt
cagcagatgtctgatgatccgagcaatcaagtttcccaagtgtttgagaagtcactgcag
tatgtgaagcgtttcagccggtacaagaatcctgatgctgttagacaagttcgagaaatc
cttagcagatatcagcttgctgaattcgagctctgcgtcctggggaatctttgtccagaa
accgttgaggaagctattgccatggtcccatctataaagaatagaggtcgcacgcttgat
gaggaggcaatcgagaaaatgctgaatgatctctccctgataaagaagtttgagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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