KEGG   Nicotiana attenuata (coyote tobacco): 109218520
Entry
109218520         CDS       T05870                                 
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
  KO
K10610  DNA damage-binding protein 1
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03420  Nucleotide excision repair
nau04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109218520
  09124 Replication and repair
   03420 Nucleotide excision repair
    109218520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:nau04121]
    109218520
   03400 DNA repair and recombination proteins [BR:nau03400]
    109218520
Ubiquitin system [BR:nau04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     109218520
DNA repair and recombination proteins [BR:nau03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      109218520
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      109218520
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 109218520
NCBI-ProteinID: XP_019238432
Position
Unknown
AA seq 1095 aa
MSIWNYVVTAHKPTNATHSCVGNFTAPHELNLIIAKCTRIEIHLLTPQGLQCIRLQPMLD
VPIYGRIATLELFRPHGETQDFLFIATERYKFCVLQWDAEASEVITRAMGDVSDRIGRPT
DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKP
TIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEE
TIVYCSASAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVNGLKIE
LLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDAKGSYVEVLERYVNLGPIVDFC
VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDT
FLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAIYNQLVQVTSNSVRLVSSI
SRDLKNEWFAPAGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCL
DINPIGENPNYSQIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISY
LLCALGDGHLLNYVLSMSTGELTDRKKVSLGTQPITLRTFSSKDATHVFAASDRPTVIYS
SNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHA
RRISHQEQTRTFALCSVKYTQSNADDPEVHFVRLLDDQTFEFISTYPLDQFEYGCSILSC
SFSDDSNVYYCVGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK
LLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLI
FKHEEGAIEERARDYNANWMSAVEILDDDIYLGSENNFNLFTVRKNSEGATDEERSRLEV
VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQ
TSLRKVIKGVGGLSHEQWRSFYNEKKTVEAKNFLDGDLIESFLDLSRSRMEDISKAMAVP
VEELMKRVEELTRLH
NT seq 3288 nt   +upstreamnt  +downstreamnt
atgagtatatggaactatgtggttacggctcacaagccaacgaacgctacacattcctgt
gttggcaatttcaccgctcctcacgagctcaatcttatcattgcgaaatgtactcgaatc
gagattcatttactcactccccaaggtttacagtgtattcgtctgcagcctatgttagat
gtgccaatatatgggagaatcgcgacactcgagcttttccgtccccacggtgaaacacaa
gattttctcttcattgcgacggagcgatataaattctgtgtccttcaatgggatgctgag
gcatctgaagttatcacaagagcaatgggagatgtctcagatcgaataggccgtcccacc
gataacggtcagattggtataatcgacccagactgcagattgatcgggttgcatctttat
gatggactatttaaggttattccatttgataacaaaggccaactgaaggaagcctttaac
atcaggcttgaggagcttcaagttttggatattaaattcttatatggttgcccaaagcct
acaattgttgttctatatcaggataacaaggacgcccgacatgtcaaaacatatgaggtg
tcgttgaaggataaagattttattgaagggccatgggctcagaataatctcgataatgga
gcttctttgctaataccagtacctccgccactgtgtggtgtactgattattggagaagaa
accatagtttactgtagcgcttcagcttttaaggctatcccaattagaccttctatcaca
agagcatatgggcgggttgatgctgatggttctcgatatttgcttggggatcataatggg
cttcttcacctacttgtaatcactcatgaaaaggaaaaagttaacggactcaaaattgag
ctactgggagaaacttctattgcatcaaccatatcatacctagacaatgcttttgtcttc
attgggtcaagctatggagattcacagctcgtaaagctcaatctccagcccgacgccaaa
ggttcttatgtggaagttctagagagatatgtcaatttgggaccaattgtggacttctgt
gttgttgacctggagaggcaaggtcaaggtcaggtcgtgacttgctctggagcctataag
gatggctcacttcgtattgttcgaaatggaattggaataaatgaacaggcgtctgtggaa
ctacaagggatcaaaggaatgtggtcccttagatcagctactgatgatccatatgacaca
ttcttggttgttagcttcattagcgagacacgtgttttagctatgaaccttgaggatgag
ctggaagaaactgagatagaaggcttcaattctcaagtccagaccttgttttgtcatgat
gctatatacaaccagcttgtacaggttacttctaactctgtaagattggtcagctctatc
tctagagatctgaaaaacgaatggtttgctccagccggctactcagtcaatgttgcaact
gctaatgccactcaggtactgttggcaactgggggtggccatctggtctacctagaaatt
ggtgatggggtgctgaatgaagtaaaatatgccaagttggattatgatatctcatgcctg
gacataaatccaattggtgagaatccaaactatagtcaaattgcagcagttggaatgtgg
acagacataagtgtcaggatatattcacttcccgacttgaatctcattacaaaggaacag
ctaggaggggagataattcctcgttcagttcttatgtgttccttcgaagggatatcttat
ctactatgtgctttgggagatggtcatctcttgaattatgtattgagcatgagtactggt
gagctgacagacaggaaaaaagtgtctcttggaacccagcccataacacttcgtacattc
tcatctaaagatgctacgcacgtctttgctgcctccgataggcccacagttatttacagc
agtaacaagaagctgctttatagcaatgtaaatctaaaagaagttagtcatatgtgccca
ttcaatgttgcagcttttccagacagcctcgcaattgcaaaagaaggagagttaacaatt
ggcactattgatgaaattcaaaagcttcacatccgttcaatacccctcggggagcatgca
cggcggatcagccatcaagagcagaccaggacatttgctctatgcagcgtcaagtatact
cagtcgaatgcagatgatcctgaagtgcattttgtccgcctgttagatgatcagacattt
gagttcatatcaacttacccccttgaccaatttgaatatggttgttccatacttagctgc
tccttttctgatgacagtaatgtgtattattgcgttgggactgcttatgtgatgccagag
gaaaatgaacctaccaagggccgaattttagtttttatagttgaagatggaaagctccaa
ctaattgcagagaaggaaactaagggagctgtctactctctaaatgccttcaatgggaaa
ctgcttgctgcaatcaatcagaagattcagttgtacaagtgggcctcgcgtgaagatggt
ggcagccgagaattgcagacagaatgtggacaccatggtcatatattggctctttatgtt
caaacacgtggggattttattgtcgttggtgatttgatgaagtccatttctctactgatt
ttcaagcacgaggagggtgctatagaggagcgagcccgggactataatgcaaattggatg
tcagctgtcgagattctcgacgatgacatttatcttggttcggagaacaactttaacctt
ttcacggtcaggaaaaatagtgagggtgctacagatgaagagcgcagccgtcttgaagtg
gttggtgaataccaccttggtgaatttgttaataggtttagacacggttcacttgtcatg
cggttgccagattcagatgttggccagatacctaccgtcatatttggcacagtgaatggt
gttattggggtcattgcctcgcttcctcatgatcagtatttatttttggaaaagctgcag
acaagcttaaggaaagtgattaagggtgtaggcggactgagccatgagcagtggaggtcg
ttttacaatgagaagaaaactgtagaagctaaaaactttcttgacggagatttgattgaa
tcattcctagatcttagcaggagccggatggaagatatttctaaagcaatggcagttcct
gttgaggaactaatgaagagagtggaagagttgacaaggttgcattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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