KEGG   Nicotiana attenuata: 109229769Help
Entry
109229769         CDS       T05870                                 

Definition
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
nau  Nicotiana attenuata
Pathway
nau03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109229769
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nau03041]
    109229769
Enzymes [BR:nau01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     109229769
Spliceosome [BR:nau03041]
 Complex C
  Other components
   Step II factors
    109229769
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: OB_NTP_bind HA2 Helicase_C DEAD
Motif
Other DBs
NCBI-GeneID: 109229769
NCBI-ProteinID: XP_019250868
Position
7
AA seq 855 aa AA seqDB search
MFVKPRYIEKEEEEAFSAEEIEDICGAMRQMLYEAHTVQPGEGSTTAQVQYMGLNAKLQN
WKAPPFPVRREFGSSVLPSFLHSELFQVLMDEKDTEKTAFTIPWGTYCYRVMPFGLKNVE
CSDFGISMCWCFGTSGSLSAAVMDTNGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAATSV
AKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDE
AHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFDCNIFTIPGRTFPVEI
LYTKQPESDYLDAALITVMQIHLTEPEGDILLFLTGQEEIDYACQCLFERMKGLGKNVPE
LIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIYYVIDPGFAKQNVYN
PKQGLDSLVITPISQASAKQRAGLAGRTGPGKCYRLFTESAFHSEMSPTAIPEIQRINLG
NTVLMMKAMGINDLLSFDFMDPPSPQALVSAMEQLYTLGALDEEGLLTKLGRKMAEFPLD
PPLPKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLL
AVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDRYKLDVVSAGKNFTKIRKA
IAAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVT
VVDPKWLVELAPRFFKVADSTKLSKRKRQERIEPLYDRCHEPNSWRLSKRRASIINEMPA
IKLFLKRFLVMHVLGLFSTHPFSLFSLSASLIPWEDSVIASVKSPKEIRKHILSNSYLFV
LHRGGKNPDREHFPL
NT seq 2568 nt NT seq  +upstreamnt  +downstreamnt
atgtttgttaagccaaggtacatagaaaaagaagaagaagaggccttcagtgccgaagaa
attgaggacatctgtggggcaatgaggcaaatgttatacgaggctcacacggtccagccg
ggtgaaggctcaaccactgctcaggtgcaatatatgggtctaaatgccaaacttcaaaat
tggaaggcacctccgttcccagtcaggcgggaattcggtagttcagtattgccatctttt
ctacattctgagttatttcaggttctgatggatgaaaaagacacagaaaagacggctttc
accataccttggggtacttactgttacagggtcatgccgtttggtttgaagaacgtcgag
tgttctgattttggaatatctatgtgttggtgctttggtacttctggttcactttctgct
gctgttatggatacgaatggcaagacaacacaggtgacacagtatctagctgaggcaggg
tacacaacaaaggggaaaattggctgtactcagcctcgtcgagtggctgcaacgtcagtg
gctaagagagttgctgaggagtttggttgccgattaggtgaagaggtcggttatgctatt
cggtttgaagattgtactgggccagatactgtgatcaaatatatgactgatggcatgctt
ctgagggagattttgatcgatgaaaatttgtcccagtattcagtcataatgcttgatgaa
gcacacgaaagaacaattcacactgatgttcttttcggtttgcttaagcagctcgtgaag
aggagacctgaccttcgtctaattgtcacatctgcaactttggatgcagagaagttttct
ggttatttcttcgactgcaacatctttacaatcccaggaagaactttcccagtagagata
ctctacacaaagcagccagaaagtgattaccttgatgcagctttaattactgttatgcag
atccacttgacagaacctgaaggtgatatcctcctcttcttgactggtcaagaggagatt
gattatgcttgccagtgccttttcgagaggatgaaaggactaggtaaaaatgttcctgaa
ctgatcatactacctgtctatagtgccttgcccagtgaaatgcagtccagaatttttgac
cctgcccctcctgggaagagaaaagttgttgttgctactaatattgctgaagcttctttg
acaattgatggtatatattatgttattgatcctggatttgcaaagcaaaatgtctacaat
ccaaaacaaggacttgattcactggttattaccccaatttcacaagcatcagcaaagcaa
cgagcagggcttgctggacgaaccggacctgggaagtgttaccgtctgtttactgagagt
gcattccacagtgaaatgtcccctactgccattcccgaaatccaaaggataaatcttggg
aacacggttcttatgatgaaagcaatgggtattaatgatcttctgtcgtttgatttcatg
gacccaccttcccctcaggctctcgtatctgccatggagcaactttacactcttggagca
ctcgatgaggaggggctcctgacgaagctgggaagaaaaatggcggaatttccattagat
cctcctttgcccaagatgcttcttgctagtgtggaccttggctgtagtgatgagatcttg
accataattgctatgattcaaaccggaaacatcttttaccgaccaagggaaaaacaagca
caggccgatcagaaaagggccaaattttttcagcctgagggtgatcatcttaccttgctt
gctgtttatgaggcttggaaagccaaaaacttttcaggtccatggtgttttgaaaatttt
gtccagtctcgatctcttaggagggcgcaggatgttagaaaacagctgctctccatcatg
gacaggtataaattggatgttgtgagtgctggaaagaatttcacaaagatccggaaggct
attgctgcaggtttcttttttcatgctgctagaaaggatcctcaagagggttacagaact
ctagttgagaaccagccagtttacattcatcctagcagtgctcttttccagagacagcca
gactgggttatttatcatgagcttgttatgacaacaaaggagtacatgcgtgaagtgact
gtggttgatcctaaatggcttgtcgagttggcaccaagattcttcaaagtggctgattca
acgaaattaagcaagcgcaagagacaggaacgtattgagcctctttatgatagatgtcat
gagccaaactcatggcgattgagtaagaggagagcttcaatcatcaatgaaatgcccgct
atcaagctatttttgaagcgctttttggtaatgcatgtattgggccttttctctactcat
ccattctctttgttttctctctctgcctctctcattccctgggaggacagtgtaatcgca
tcagtgaaatcaccaaaggagatcagaaagcacatattgtcaaattcatatctgtttgtg
cttcacagaggtgggaaaaatcctgatagggagcacttccctctatga

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