KEGG   Candidatus Nitrosopelagicus brevis: T478_1028
Entry
T478_1028         CDS       T03537                                 
Name
(GenBank) MiaB-like tRNA modifying enzyme, archaeal-type
  KO
K15865  threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
Organism
nbv  Candidatus Nitrosopelagicus brevis
Brite
KEGG Orthology (KO) [BR:nbv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:nbv03016]
    T478_1028
Enzymes [BR:nbv01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.5  tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
     T478_1028
Transfer RNA biogenesis [BR:nbv03016]
 Eukaryotic type
  tRNA modification factors
   Methylthiotransferase
    T478_1028
SSDB
Motif
Pfam: Radical_SAM UPF0004 TRAM TRAM_2 zf-PARP
Other DBs
NCBI-ProteinID: AJA92687
UniProt: A0A0A7V0Z4
Position
841166..842434
AA seq 422 aa
MAKIWVEAYGCSASYSDSEMISGLIVNGGHTLAENSEDSDLNVIVTCSVKDATADKMIRK
IMDSSSKPLVVAGCLPKAEKTKVEKFAENASLMGPNSIGKTLQVIQSTLDGKKTIALEDS
DLSKVGLPKIRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRVGDIVRQVKTELADG
CCEVWLTSTDNGCYGFDINSDLPELVNTVSQIPEKFFMRVGMMNPMYMPRIREGLLKSFE
SSKVFKFLHVPVQSGSDKVLNDMKRGHTAKTFRDVAQQFREKFGKFTISTDIIVGFPTET
EEDFQMTMQLLEETRPDIGNLSRYSPRPGTDAAEMPQIDMVEMKRRSKLAYELICKISKE
NNEKWIGWKGEAVFDEEFENQKRGRNFAYKPIFVNEEPKIGDVRTVEITDATVHSLIGKI
IR
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggcaaaaatttgggtagaggcttatggctgctctgctagttattcagactctgaaatg
atttcaggtttgattgttaatggaggtcataccttagcagaaaattcagaagattcagat
cttaacgtcatagttacttgttcagtaaaagatgccacagcagataagatgattcgtaaa
atcatggattccagttcaaaaccactagttgttgcaggatgtttgccaaaagcagaaaaa
accaaagtggaaaaatttgcagaaaatgcaagtctaatgggtccaaattcaattggtaag
acactacaagttattcaatctacacttgatgggaaaaaaaccatcgccttagaggattcg
gatttatcaaaagtaggattaccaaagattcgtcttaatccagcagttggaattgttgaa
atagcaagcggatgtatgagtgaatgtacattttgccagacaaaaatatcaaaaggagat
ttgcaaagttacagagtaggagacattgtaagacaggttaaaaccgaattagcagatgga
tgttgtgaagtatggctaacatcaacagacaatggatgttatggttttgatattaattca
gatttaccagaattagtaaatactgtatcacaaattccagaaaaattcttcatgagagta
ggaatgatgaatccaatgtatatgccaagaatacgtgaaggattgctaaaatcatttgaa
agtagcaaagttttcaaatttttacatgtgccagttcaaagtggaagtgacaaagttcta
aatgacatgaaaagaggacatacagcaaaaactttcagagatgttgcacaacaattcaga
gagaagtttggtaaatttactatttcaacagatatcatagttggattcccaactgaaaca
gaagaagactttcagatgacaatgcagttgttagaagaaacaagaccagatatcggcaac
ttatcaagatatagtccaagaccaggaacagacgctgcagaaatgccacaaatcgacatg
gtagaaatgaagagaagaagcaagttggcttatgaattaatctgtaaaatttcaaaagag
aataatgaaaaatggattggttggaagggtgaagcagtttttgatgaggaatttgagaat
cagaaaagaggtagaaattttgcatacaaaccaattttcgtcaatgaagaaccaaaaatc
ggggatgtcagaacagtagaaattactgacgccaccgttcatagcctaattgggaagatt
atcaggtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (116)   
   KEGG ORTHOLOGY (1)   
   RefGene (113)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (135)   

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