KEGG   Notothenia coriiceps (black rockcod): 104945449
Entry
104945449         CDS       T04920                                 
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03020  RNA polymerase
ncc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104945449 (polr2a)
  09124 Replication and repair
   03420 Nucleotide excision repair
    104945449 (polr2a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncc03021]
    104945449 (polr2a)
   03400 DNA repair and recombination proteins [BR:ncc03400]
    104945449 (polr2a)
Enzymes [BR:ncc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104945449 (polr2a)
Transcription machinery [BR:ncc03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     104945449 (polr2a)
DNA repair and recombination proteins [BR:ncc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      104945449 (polr2a)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 104945449
NCBI-ProteinID: XP_010769423
UniProt: A0A6I9N1L4
Position
Unknown
AA seq 1617 aa
MHGPPSGDSACPLRTIKRVQFGIISPDELKRLSVTEGGIKYPETTEGGRPKMGGLMDPRQ
GVIDRSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKILRCVCFFCSKLLVDPT
NPKIKDILIKSKGQHRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQDAEEDLTKDKGHG
GCGRYQPRIKRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDVILGLDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLHIDQVGVPRSIAANMTFPELVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPALLKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNHWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFRFDCTNERALRRMLQEDVVKDVLTNANVQSSLEKEYDRMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINVRTPTDLNPLRVVEGLQDLSKKLVI
VNGEDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAYDWLLGEIEAKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINSGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIDQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLSLLCDTMTSRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHAENDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRRSMSGCSGLCGAVRGS
NT seq 4854 nt   +upstreamnt  +downstreamnt
atgcatggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggttgtccgttacggaggggggtatcaaa
taccccgaaacaacagaaggaggacgtcctaaaatgggtggccttatggaccccagacaa
ggggtcatagaccgatctgggcgatgtcagacatgtgcaggcaacatgacagaatgccct
ggccacttcgggcacatagaactggcaaagccagtcttccacgtcggcttcgtaacaaag
attatgaagattcttcgttgcgtctgcttcttttgctctaagcttctagtggatccaacc
aatccaaagatcaaagacatcctaataaaatctaaagggcagcacagaaaacgtttgaca
catgtatacgagctgtgcaagggaaaaaacatctgtgaaggaggagaggagatggacaac
aagtttggaatggaacagcaggatgctgaggaggaccttaccaaggacaagggtcacggt
ggctgtgggcgttaccaaccccgcatcaaacgcaccggcttggagctgtacgccgagtgg
aagcacgttaacgaggattcgcaggagaagaaaatcctgctgagtcctgaacgtgtgcac
gagatcttcaagcgcatctccgatgaagaagacgtcatcttgggcctggaccccaagttt
gcccgaccagagtggatgattgtaacggtgttacctgtgcctcccctggctgtcaggcct
gctgtcgtcatgcagggctctgctcgaaaccaggatgacttgacccacaagctggcggat
attgtcaaaatcaacaaccagctgagaagaaacgagcagagcggcgctgcggctcacgtc
atcgctgaggatgtcaaactgctccagtttcacgtagccaccatgattgacaacgagctg
ccaggtctgccaagggcaatgcaaaagtctggccgtcctctaaaatcccttaaacagcgt
ctaaaggggaaggagggccgagtccgaggtaacctcatgggtaagcgtgtggacttctcc
gcccgtaccgtcatcacgccagaccccaacctgcatatcgaccaagtaggcgtgcctcga
tccatcgcagccaacatgaccttcccagaactcgtcacaccctttaatatcgacagatta
caagagctggtacgaagaggcaacagccagtacccaggagccaaatacatcatccgggac
aacggggaccgaattgaccttcgatttcaccccaaaccaagtgaccttcacctgcagatc
ggctacaaggttgaaagacacatgtgtgacggcgacatcatcatcttcaacagacagcct
acactacataaaatgtccatgatggggcacagggtccgaatcctgccgtggtcaacgttt
cgactcaacctcagtgtgaccaccccatacaacgctgactttgacggggatgagatgaac
ctccacctgcctcagtccttggagacgagggctgaaatccaggagctggccatggtgccg
cgtatgatcgtcaccccccagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
acagccgtgcgcaaattcaccaagagagacgttttcttagagaggggggaggtgatgaac
ctcctcatgttcctctccacctgggatggaaaagtgcctcagccggccctcctgaagccc
cgccctctgtggaccgggaagcagatcttcagcctaatcattcccggacacattaacgtg
atccgcacacacagcacccatcccgacgaggaggacagcggcccctacaagcacatctca
cccggggacaccaaggtcatagtggagaatggggagctgatcatgggcatcctgtgtaag
aaatccctgggaacctccgccggctccctcgtccacatctcgtacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtggtcaaccactggctgctcatc
gagggtgcttctattggtattggtgactccattgctgatgccaagacctacctcgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggagccgacccccggtaacactctgaggcagacctttgagaaccaggtgaat
cgtatcctgaacgacgctcgtgacaaaactggatcctccgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggccgggtccaaaggctcaaagattaacatctca
caggttatcgccgtggtggggcagcagaacgtggagggtaagcgaatccccttcggcttc
aaacaccgcacgctgcctcacttcatcaaggatgattacggtcctgagagcagaggcttc
gtggagaactcctacctggccggtctgacgcccactgagttcttcttccacgccatggga
ggcagagagggtcttatcgacacagccgtcaagacagccgagactggttacatccagcgt
cgtctgatcaagtccatggagtcggtgatggtgaagtacgacggcaccgtgcgtaactca
atcaaccaggtggtgcagctgcgctacggagaggacggcctggcaggagagaacgtggag
tttcagaatgtggcaacgctcaaaccctcacacaaggccttcgagaagaagtttaggttt
gattgcaccaatgagcgagcgctgaggcggatgctgcaggaggacgtagttaaagacgtg
ttgaccaatgccaatgtgcagagctctttggagaaggagtatgacaggatgaaggaggac
agggaggtcctccgagccattttccccaccggggacagtaaggttgtgctgccatgcaac
ctggccagaatgatctggaacgctcagaagatcttccgcatcaacgttcggaccccgaca
gacctcaaccctctgagggtggtcgagggtcttcaagacttgagtaaaaagctggtgatc
gtgaacggcgaagacccgctcagtcgacaggcccagcagaacgccaccctgctcttcaac
atccacctgcgctccaccctctgctccaagcgcatgacggaggagttccgcctttccact
gaagcctacgactggctgctgggagagatcgaggccaaattcaaccagtccattgctcac
ccaggagaaatggtgggcgctctggctgctcagtctctgggagagcccgccacccagatg
accctgaacactttccattacgccggtgtgtccgccaagaacgtaacactgggtgtgccc
cgtctaaaggagttgatcaacatctccaagaagcccaaaaccccctcgctgaccgtgttc
ctgctgggtcaggcggcccgtgacgccgagagggccaaagacatcctctgtaggctggag
cacaccacactgcggaaggtgacggccaacaccgccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactatgagatgcccgacttt
gacgtgacgcgcatctcaccgtggctgctgcgtatcgagctcgaccgcaagcacatgacc
gatcgcaagctgaccatggagcagatcgcagagaagatcaactcaggtttcggagatgac
ttgaactgcatcttcaatgacgacaatgcagagaagctcgttctgcgaatccgaatcatg
aacagcgacgagaacaagttccaagaggacgaggaggtggtggacaaaatggatgatgac
gtgttcttgaggtgcattgagtccaacatgctgactgacatgaccctgcaaggcattgac
cagatcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcatcatc
acggaggaaggtgagttcaaggccctgcaagagtggatcctggagacggacggtgtgagc
ctcatgagggtcctcagcgagaaggacgtggatcccgtcaggaccacctccaacgacatc
gtggagatcttcacggtcttgggaattgaggcggtgcggaaggctctggagagggagttg
aaccacgtcatctcctttgacggttcctacgtcaactaccgccatttgtctctgctttgt
gacaccatgacctcccgcggtcatctgatggccatcacgcgtcacggcatcaatcgtcaa
gacacaggaccgctcatgaagtgttcctttgaggaaacggtggatgtgttgatggaggcg
tcctcccacgctgagaacgaccccatgaagggtgtgtcggagaacatcatgctcggccag
ctggccccatgtgggacaggatgcttcgatttgctgttggatgcggagaagtgtaaatac
ggcatggagatccctacaaacattcctggcatcagcgtggctggacccactggaatgttc
tttggcacggtgccgagtcccatgagcggtatgtcgcctgccatgaccccctggaacaca
ggagcgacacccgcctacggagcctggtcccccagcgtcggaagcggcatgacccccgga
gcggcaggtttctctcccagcgcggcgtcagacgccagtggcttctctcccggctactcc
cccgcctggtctcccactcctggctctccggggtctccaggacctgccagcccctacatc
ccatctccaggtggagccatgtcacccaactactcccccacctcccccgcgtacgagcct
cgccgctcgatgtcgggctgtagcgggttatgtggggcggtgagagggtcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (57)   

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