KEGG   Notothenia coriiceps (black rockcod): 104954923
Entry
104954923         CDS       T04920                                 
Symbol
pnn
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03013  Nucleocytoplasmic transport
ncc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    104954923 (pnn)
   03015 mRNA surveillance pathway
    104954923 (pnn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncc03019]
    104954923 (pnn)
   03041 Spliceosome [BR:ncc03041]
    104954923 (pnn)
Messenger RNA biogenesis [BR:ncc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104954923 (pnn)
Spliceosome [BR:ncc03041]
 Complex C
  Other components
   EJC/TREX
    104954923 (pnn)
SSDB
Motif
Pfam: Pinin_SDK_memA
Other DBs
NCBI-GeneID: 104954923
NCBI-ProteinID: XP_010780428
UniProt: A0A6I9P057
Position
Unknown
AA seq 458 aa
MSEFVLCLFLTLSFLHPQQEEWTSHNNHLVKYIRTKTKPNIFYAPGKMCSATQKLLDEST
KKLNAVFDERREAFAEHLSKMESRPRRQPNRDQDGNTTGTDRPAEGKPAGQVVKVTGNRG
DAEMEEDDEEDEEMEERDKEGAKKQIIMEEGEKEVLQKVEEEVEGMELSEDVRKVDEEEK
EGEGGVKAVEEKEEKEPSPGSEEMEGEGEKQKEDRTMVDEGDAEKNLPEIQIEKPQETPS
SEPSAPSQAADNGPQPPPILPAEELAEKPPEIPEPQKASVAPEQEVSTPGLVLQNSAAES
HTAEGKPEEAPQKPAESQEAPAITPSPAKKGEEGGRGRKKAKEPKKSRNTSSSSSGSSSS
GSSSSSSGSSHSSSSSSSSSASSKSRSRDPTKRKRRPSARDRKKGEERSQRKRGGSSGGG
RDSKASKEKKKRRSDEGRGRSSRGDREHKDRDRKDKRR
NT seq 1377 nt   +upstreamnt  +downstreamnt
atgtcagagtttgtcctttgcctgtttttgacattgtctttcctccatccacagcaagag
gagtggaccagccataacaaccatctggtgaaatacatccgcaccaagaccaagcctaac
atcttttatgcgcctgggaaaatgtgctccgccacacagaaactcctcgacgagtccacc
aagaaactcaatgctgtgtttgatgagaggcgtgaggcttttgccgagcacctcagtaag
atggagtcccgcccccggcggcagccaaaccgcgaccaggacggcaacaccacgggaacg
gaccgcccggcggagggtaagccagcaggtcaggtagtcaaggtgacaggtaacaggggg
gatgcagagatggaggaagacgatgaggaggatgaggagatggaggagagggataaggaa
ggggctaaaaagcagattattatggaggagggggagaaggaagtgttgcagaaggttgag
gaagaggtagaggggatggagttgagtgaggatgttaggaaagtggatgaggaggagaag
gaaggagaggggggggttaaagctgtagaggagaaggaagagaaggagccaagcccaggg
tcagaggagatggagggggagggagagaaacagaaagaggacaggactatggtagacgag
ggggatgcagagaagaatctcccagagatacagattgaaaagccccaggagaccccgtcc
tccgaaccaagcgcacccagccaagcagcagacaacgggccccagcccccccccatcctc
cctgcggaggagctagcagaaaagccccccgagatcccagaaccacaaaaagcctccgtg
gctcccgaacaggaagtgagcacgcctggcctcgtgctgcagaactcagccgctgagagc
cacactgcggaggggaaaccggaggaggctccccaaaaaccagccgagtcccaggaggcc
cccgccatcaccccctcacccgcaaagaagggagaggagggcgggagaggcaggaagaag
gcaaaggagccaaagaagagtcgcaacacctcctcttcgtcctcgggctcctcctccagc
gggagctcgtcctcttcctcagggtccagccactcctcgtcttcctcctcttcttcatcc
gcgtcgtcaaagagccgcagtcgagaccccactaagcgcaagaggaggccgtcggcgagg
gacaggaagaaaggggaggagaggagtcagcgcaagagaggggggagcagcggaggaggg
agggactcaaaggcgtccaaggagaagaagaagaggaggagcgatgaagggaggggccgg
tcctcccgcggcgatagggagcataaagatagagacaggaaggacaagagacgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (46)   

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