KEGG   Notothenia coriiceps (black rockcod): 104955107
Entry
104955107         CDS       T04920                                 
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc04510  Focal adhesion
ncc04512  ECM-receptor interaction
ncc04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    104955107 (col4a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    104955107 (col4a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    104955107 (col4a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ncc04147]
    104955107 (col4a2)
   00536 Glycosaminoglycan binding proteins [BR:ncc00536]
    104955107 (col4a2)
Exosome [BR:ncc04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   104955107 (col4a2)
Glycosaminoglycan binding proteins [BR:ncc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   104955107 (col4a2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 104955107
NCBI-ProteinID: XP_010780638
UniProt: A0A6I9P0S4
Position
Unknown
AA seq 1140 aa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 seq 3423 nt   +upstreamnt  +downstreamnt
atgggaatcgtgttttttatcatggactgggagttcaggggtcagttggtgaggacctct
gaggtttggggggcggacagtgttcctggagaaggtccaagaggacaatatggagacaaa
ggttactcaggtcagcctggtccacccggcgcacccgggctaagtggacaagacggtgaa
gtccttgggggcttcaagggccaacgtggtctacctggagacgatggcgctgcaggtcat
gatggagttccaggaacacctggcgctccaggcggctgtagtccaggagatggaggacag
gtggatgtaacaggtccttgtggcacttttcccggacctgctgggctacctggacttcca
ggttccagtggattaccgggtttcgaaggtcctccaggccaaaagggatcaaagggtcca
cctggagaacatggagggaaaggcgaaacaggagaacaaggcaaaggtggccgtactgga
ccacatggtttttccggcccccgtggagagttgggggttcccggccgcaatggttcagta
ggatcccctggtgtgcctggtgtgccgggcagatatggttcgcaaggtgaaaaaggtgct
cacggagagatctttggagcatcgtcaggatcccccggggactcaggtcagccgggactg
caagggaataaaggccagactggagatccaggagatcaaggctatccaggaatgggcggc
atgcctggtatgatcggcttcaagggtgagactggccctctgggtctgcagggggtggaa
ggaaggcctgggcctgcaggcaagtacggttaccctggagaccctggaggagcgggtcta
cctgggcagtcaggcagtaccggacagccaggtttcactggagagaggggagttgaggga
gacccgggccctccaggtccaataggattaaaaggagtccctgggctatacggtgctaat
ggtggtaccggagagtacggcccatcaggtgaacctggagattctggtcaagatggacgc
ccaggagttccaggaatgaagggatacaaaggatctcccggcatgtcaggctttgagggt
aacaggggcaattttgggaggaagggcttcagtgggccaggcggagacccaggaacgatg
ggccaagtcggcctaaaaggattgctgggtcaaagtggaacgaaaggtgatcgtggtttg
agagggccctccggggataagcctctcatccccgcccagatggctgttgacatgaaggga
acgaagggggacttcggaaattatggaaatcaaggtttcaccgggccgagaggtcttaag
ggtttgcccggtgtgcctggtaaagagggatctcacggatatcctggaaagcccagcaat
aacaagggtcaccgtggagatccaggtgcagaggggctgctgggaataaaaggaatgccg
ggcccaactgggaacagaggaattactgggtttgggggaatgccaggcaacaagggcatt
aatggaggtcctggtgcctatggtgcatcaggcgaaacaggaaggaagggttttaaaggt
gagaaaggcccacgcatagaccttccaggaaccaccgggttgagaggagagcatggtctt
ccaggagatccaggccagaaaggattacctggacaaccaggggactggggcacgcctgga
tttggtggaattgaagggagaaggggagagtctgggaatccaggaataatagggtacaca
ggctctgatgggcagaagggaactcctggtaaccaaggtcaaaaaggctttactggaact
cctggaaaggacggacacccaggttttcctggcttcccaggaaacaaaggtttccctggc
ctgaagggtctttatggattacatggacttaaaggacaaaagggtgtccccggcacacca
ggtctggataccactggaccaactggggaacccggaagcaaaggacagaagggaggagac
ggggaccccaacagccagccaggttttcccggcacagtgggtttgaaaggctttcagggc
cctctaggtgaccggggtcaacctggatcgtcgggactccgaggcccatttggaccagac
gggactcctgacagaccaggactcataggggaccctggctctcatggacctaaagggtac
ccaggtttccctggagcaaaagggtttcctggagtggatgctcctcctggggaaaaaggt
gtactgggaacaaatggttttcctggaatccctggcaggaaaggactcaaaggagataga
ggttcctttggatacagggggccaaacggtgtttctgggaagaaaggggaaaaaggagag
caaggagtgatgggcattcccggaggctttggtttgaagggagaaagagggcaatctggc
ctaaaaggaaactctggacctacaggttttcgtggaataccaggaaaccagggtcccctt
ccaattccagtaagagtcccaggagagagaggcctctcaggaccacagggtatcaaagga
ccagagggggtcagaggggaatcagggccacaggggccccccggcgatacaggtttcatc
ggacccatcggtcggaagggcatgccggggattggtggtacaccaggaacgcctggatac
cgtggagagtccggacaaatgggtcaccccggtctggaaggcagtgaaggtcaccacggc
aaccctggtatccatgggttacctggtatgccgggccgcagcgtcagcgtgggatacctg
ctggtgaaacacagtcagacagaacaggtgcccatgtgtcctgtgggcatgtccaaactg
tgggacggctacagtctgctgtacctcgagggccaggagaaggcccacaaccaggacctc
ggtttggctggctcctgcctcccacggttcaacaccatgcccttcctgtactgcaaccct
ggagacctttgttactatgccagcaggaatgataagtcctactggttgtcgaccaccgct
cctattcccatgatgcctgtggtagagggagagattaaaccgtacatcagccgctgctca
gtatgtgaagctccatcagttgccatcgcaatccacagccaggacatcaccatccctatg
tgtcctgcgggctggcgcagcatgtggatcggctactccttcctcatgcacacagcagca
ggaaatgaaggcggaggtcagtctttgtcatcgcccggctcttgcctggaggacttccgc
acagcaccgttccttgagtgtaacggggccaaaggcacatgccactactttgctaacaaa
cagagcttctggctaacctccatagatcagtcgttccacactgagccgtcatcagagacg
ctcaaagccggtcagctgctgtcacgcatcagccgctgccaggtctgcatgaagaacttg
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (37)   

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