KEGG   Notothenia coriiceps (black rockcod): 104958120
Entry
104958120         CDS       T04920                                 
Symbol
ssrp1
Name
(RefSeq) FACT complex subunit SSRP1 isoform X1
  KO
K09272  FACT complex subunit SSRP1/POB3
Organism
ncc  Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ncc03000]
    104958120 (ssrp1)
   03036 Chromosome and associated proteins [BR:ncc03036]
    104958120 (ssrp1)
Transcription factors [BR:ncc03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG2-related
    104958120 (ssrp1)
Chromosome and associated proteins [BR:ncc03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    FACT complex
     104958120 (ssrp1)
SSDB
Motif
Pfam: PH1_SSRP1-like Rttp106-like_middle SSrecog POB3_N HMG_box HMG_box_2 SSRP1_C DUF2582 DUF4543
Other DBs
NCBI-GeneID: 104958120
NCBI-ProteinID: XP_010784130
UniProt: A0A6I9P8U9
Position
Unknown
AA seq 723 aa
MGDTLEFSDIYQEHKGSWNDGRLRFSKQTVVYKSSKTGKVDSIPAAELNLAHWRRVCLGH
GIKLGTNSGHVYKYDGFRDTDLEKISEFFKTNYKLEVMEKDMCVKGWNWGTTKFSGPLLA
FEINDNAAFEVPLSNVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPSQSDERQDPVE
AFAENVLSKADVIQATGDAVCVFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEELSLTLNMSEEDVERRFE
GKLSKNMSGSLYEMVSRVMKSLVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQFTFSSIEREEYGKLFDFVN
AKKLNIKNRGFKEKKGMKGKIDEYSDSDEDQHDAYLERMKAEGKIREEGNDSADSDGESD
ESFNPGEEDDDIAEEYDSNASASESGSEDGDDSDETKKKKKKEKTVKVVKEKKERKPRKE
KKRRPKEVGAPKRPMSAYMLWLNASRERIKSENPGISITEISKKAGEMWRTLSKEDKEEW
DIKAVEAKKQYEIAKQEFKDSGGGGGAAAAAAAAASSSPKKETKKAGVKKEEKKRKSAGG
DKEKDRSINDSFKSKEFIETSEDSSDSDKKSKSKKKKKKKKEESEEEEEAAASTPASSEA
DSD
NT seq 2172 nt   +upstreamnt  +downstreamnt
atgggggacacactggagttcagcgacatctaccaggagcataaaggttcctggaatgat
gggcggttgcgtttcagcaagcaaactgtggtttataagagcagcaagacggggaaggtg
gacagcatcccggctgccgagctcaacctggcccactggaggcgagtgtgtttaggtcat
ggcatcaagctgggcaccaactcgggacatgtctacaaatacgacggcttcagggacacg
gatttagagaagatctctgagtttttcaagaccaactacaagctggaggtgatggagaag
gacatgtgtgtgaaaggatggaactggggaacaaccaagttctcaggtccactgttggca
tttgagataaacgacaatgctgcgttcgaggtcccactgtccaacgtgtcccagtgcgcc
acggggaagaacgaggtcactctggagttccaccagaacgacgacaccgaggtctccctc
atggaggtccgattctacgtcccacccagccagtctgatgaacgccaagaccccgtggag
gcatttgctgagaatgtgttatctaaggctgatgtgatccaggccacaggagacgctgtg
tgtgtcttcaaagagctgcagtgtctcacacccagaggaagatacgatatccgtatctac
ccgactttccttcacctccacggtaagacctttgattacaagattccctacaccacggtc
ctccgtctattcctgctgccacacaaggaccagaggcagatgttctttgtgatcagtctg
gatcctcccatcaagcagggtcagacgcgttatcactttctcatcttgctcttctccaag
gaagaggaactcagcctcaccctcaacatgagcgaggaggatgtggagcgccgttttgag
ggcaaactcagtaaaaacatgtcggggtctctgtatgagatggtcagccgggtgatgaag
tccctggtcaaccgcaagatcactgtgcccggaaacttccagggtcactctggggctcag
tgcattacctgctcctacaaggcgtcctcaggcctcctctatcccctggagaggggcttc
atctacgtccacaagccccccgtgcacctgcgcttcgaggagatctcctgcgtcaacttc
gcccgaggaaccaccacaacgcgctcctttgactttgagatcgagacaaagcagggaaac
cagttcaccttcagcagcattgagagagaagagtacggcaaactgtttgactttgtaaat
gccaagaagctcaacatcaagaacagaggcttcaaagagaagaagggcatgaagggtaag
atcgacgagtacagcgactcggacgaagaccagcacgatgcctacctggagaggatgaag
gccgagggaaagatccgagaggagggcaacgacagcgccgactcggatggcgagagcgat
gagtcgtttaaccccggagaagaagatgatgacattgcagaagagtacgacagcaatgcc
tcagcgagcgagagcggcagtgaagatggcgacgatagtgatgaaacaaagaagaagaag
aagaaggagaagacggtcaaagtggtgaaggagaagaaagagaggaaaccccgcaaagag
aagaagaggaggccgaaggaggtcggcgcgcccaagaggccgatgagcgcctacatgctg
tggctcaacgccagccgagagagaatcaagtctgagaaccccggcatctccatcacagag
atctccaagaaggccggagagatgtggaggacgctgtccaaagaggacaaggaggagtgg
gacataaaggcagtggaggcgaagaagcagtatgaaatcgccaagcaagagttcaaagac
agcggaggaggaggaggagcagcagcagcagctgcagcagcagcgtcctccagtcctaag
aaggaaactaaaaaggctggcgttaagaaggaggagaagaagaggaagtccgccggggga
gacaaggagaaggatcgcagcatcaacgacagcttcaagagtaaagagttcatcgagacc
agcgaggactcatcggactctgacaagaagagcaagtccaagaagaagaagaagaagaag
aaggaggaatctgaggaagaggaggaagcggctgcgtccacacctgccagctctgaggca
gactctgattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (69)   
   KEGG ORTHOLOGY (1)   
   RefGene (65)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (87)   

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