KEGG   Notothenia coriiceps (black rockcod): 104960715
Entry
104960715         CDS       T04920                                 
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
  KO
K13171  serine/arginine repetitive matrix protein 1
Organism
ncc  Notothenia coriiceps (black rockcod)
Pathway
ncc03013  Nucleocytoplasmic transport
ncc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ncc00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    104960715 (srrm1)
   03015 mRNA surveillance pathway
    104960715 (srrm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncc03019]
    104960715 (srrm1)
   03041 Spliceosome [BR:ncc03041]
    104960715 (srrm1)
Messenger RNA biogenesis [BR:ncc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     104960715 (srrm1)
Spliceosome [BR:ncc03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   SR-related proteins
    104960715 (srrm1)
SSDB
Motif
Pfam: PWI
Other DBs
NCBI-GeneID: 104960715
NCBI-ProteinID: XP_010787170
UniProt: A0A6I9PHL4
Position
Unknown
AA seq 477 aa
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTETL
GFEDDVVIELIFNLLEEKNPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLATLKKVDDDKKEKDIRDRAQSKSPRSLHRPMSRRKSRSP
SPRRRSPVKRERKRSASRSPRRKPSPVASSSPPPPLMQLPAKPVEQLVEPNALEGALPEP
AIQETPSTCDTVVEVVKPDPVTEVKESSPEKPLKKEERPKSRDREKDSRRDRPHHRSRSH
SRNRRRRSRSRSYSPRRRPSPRRRMSPRRRSPPRRGPPGNRNRHRRSPVRRRRSRSASSS
GSSSSNSRSPKKAMKRISNSPPRKGVHHPEKAISPAGKDRRSPSPRARRGRGSASPARPS
GLKQKQRGRNDSPSDNAKPRPSEGSDSEEDKNDKEATADSVQQRRQYRRQNRQTSSG
NT seq 1434 nt   +upstreamnt  +downstreamnt
atggacgcgggattcttccgcggtacaagtgcggagcaagacaaccgtttcagcaataag
cagaagaaactgctgaagcagctgaagtttgcagaatgtctggacaagaaggtggacatg
accaaagtgaacctggaagtcatcaaaccttggataactcagcgagtgacagaaactctg
ggattcgaggatgatgtcgtcatagagttaatatttaacctgcttgaggagaagaatcca
gatagcaagatgatgcagatcaacctgacaggctttctgaatgggaagaacgcccgggag
ttcatgagggacctgtggcccctgctgctgagtgctcaggagaacattgctggcatcccc
tctgctttcctggaacagaagaaggaggaaattaaacagagacagattgaacaagagaag
ctagctactctgaagaaagtcgatgatgataagaaggaaaaggacatcagagacagggct
cagtcaaaaagcccaagaagtttgcatcgtccgatgtctaggaggaaatcaaggtcaccg
tcaccacggcgaaggtcgccagtgaagcgtgaaaggaaacggagtgcctctcgctcgccg
agacgcaaacccagtccagtcgccagcagctccccccctccacccctgatgcagctgcca
gccaaacctgtggagcagcttgtggagccgaatgcattagaaggagccctgccagagccg
gccatccaagaaactccttccacatgtgacacagttgtggaggtggtgaaaccagaccca
gttactgaagtcaaagaatcttcgccagagaagcctctcaagaaagaggaaaggcccaag
tcccgggacagggagaaggacagcaggagggacagacctcaccaccgctctcgttctcat
tcccgcaaccgcaggcgacgctcccgctctagatcctactctcctcgtagaagaccaagt
cccaggaggaggatgtctcctcgtcgtaggagcccccccaggcgtggcccccctggcaac
agaaacagacatagacggtccccagtccgcaggaggcgctcacgctctgcttcatcttct
ggcagcagctcctccaactctcgctctcctaaaaaagcaatgaagagaatatccaactcc
ccacccagaaagggggtccatcatcctgaaaaagccatcagccccgccgggaaggacagg
cggtcaccatctcctcgggccagaagaggccgaggctctgcgtcaccagccaggccgtct
gggttaaagcaaaaacaaaggggaaggaatgattctccgtctgataatgccaagcccaga
ccttctgaaggctctgactcagaggaggataaaaatgacaaagaggcaacagcagattcg
gtgcagcagcgacgtcagtatcgcaggcagaaccgacagacatcttcaggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (84)   
   KEGG ORTHOLOGY (1)   
   RefGene (80)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (1)   
   Pfam (1)   
All databases (102)   

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