KEGG   Neurospora crassa: NCU00276
Entry
NCU00276          CDS       T01034                                 
Symbol
mip-1
Name
(RefSeq) MIP1-like DNA polymerase
  KO
K02332  DNA polymerase gamma 1 [EC:2.7.7.7]
Organism
ncr  Neurospora crassa
Pathway
ncr03410  Base excision repair
ncr04139  Mitophagy - yeast
Brite
KEGG Orthology (KO) [BR:ncr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    NCU00276 (mip-1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04139 Mitophagy - yeast
    NCU00276 (mip-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ncr03032]
    NCU00276 (mip-1)
   03029 Mitochondrial biogenesis [BR:ncr03029]
    NCU00276 (mip-1)
Enzymes [BR:ncr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     NCU00276 (mip-1)
DNA replication proteins [BR:ncr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase gamma complex (mitochondrial)
    NCU00276 (mip-1)
Mitochondrial biogenesis [BR:ncr03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial DNA replication factors
   Mitochondrial DNA polymerase
    NCU00276 (mip-1)
SSDB
Motif
Pfam: DNApol_Exo DNA_pol_A Mad3_BUB1_I
Other DBs
NCBI-GeneID: 3873917
NCBI-ProteinID: XP_957747
UniProt: Q9Y767
Position
III:3273151..3278020
AA seq 1456 aa
MLTPVRCRTVPNATVATAARVLRRANLFSRYPRQLGHLRWDSTIAQVLERKGLGVPSTAR
HNEIGVQQLSEHLYKQLFPRGNTDPPAPELIELAKDHLARHDLLGKTTDKTPPIAFQLPA
LVGDTLDEHFHKLGVDAAEPFLTHAKQFADAHLPPKPTSWVRRSGWTKYNRDGTTENDVL
PQGNMMCFDVEVMYKDNPYAVMACAGTPDAWYAWLSPWLLGETENKAQLVPMGDPTVDRI
IVGHNIGYDRAKILEEYDLKQTRNFFLDTMSLHVAVNGMCSQQRPTWMKHKKARELREKA
EHESASVELQEVLQGGSLTAEEADLWVDKSSINSLRDVAQFHLNVKIDKDIRDVFAETDR
NVILNQLDDLLTYCAADVQVTHQVYQVVFPNFLGVCPHPVSFAALRHLASVILPVNKTWD
TYIETAEATYLQMLHGVQERLFTLMERTLDYKADPEKYLSDPWLSQLDWSGQEIKMAKPK
KKGDVERPALNQKLPGYPQWYKDLFVKVPKELSGLDEPDKEQENRKARHEFINLTVRSRI
APLLLKLSWEGYPLFWSDQFGWTFQVPREKAETFIQRQMTPVQFEDPDVDDRLRMDVDHK
YFKLPHKDGPNARCVNPMAKGYLPYFEKGILSSEYPYAKEALEMNASCSYWISARERIKN
QMVVYEDQLPPSQRFVNKDADSNTPIGGFVLPQVIPMGTITRRAVERTWLTASNAKKNRV
GSELKAMVRAPPGYVFVGADVDSEELWIASVVGDATFKLHGGNAIGFMTLEGTKSQGTDL
HSRTASILGITRNDAKVFNYGRIYGAGLKFASQLLRQFNPSLTEAETTAIATKLYDATKG
AKTNRKSLYKRPFWRGGTESFVFNMLEEFAEQERPRTPVLGAGITEALMSRWVSKGGFLT
SRINWAIQSSGVDYLHLLIIAMDYLTRRFNLACRLAITVHDEIRYLAEEPDKYRVAMALQ
IANLWTRVMFAQQVGIQDLPQSCAFFSAVDIDHVLRKEVDMDCITPSNPIPIAHGESIDI
FQILEKGDDAKLDDSIVPQSQYAPRLENIPYTPRVPVMQRLRERAEAGDHQAFLRFIRAQ
ITNSDEELKRIIAETRYSDPYGAFSLASNGRVSGNPHQRHAAVHASTKTAAAPSKPSIAS
RFDSVSQASRIKSVAAGSDEPTIRATKAQGKAMAKASGTKLAASTKDTVLNVTIKKKVAA
PEMAAVPSTSSESKSKASATTSTTTTENATASPSSSSNVDAKKTTSKTKPTHKKETEGEP
FPSLDDPVIAARLEAVSKTSPGTRASVAAKLDALASFSMRAAAAAEAAVTTTTTPEPPTN
PPPVAPKAKEPTTTMAEKVLKPTAVPKNPTPTLTPTTKKSNPTSTPTTPKPVGRPRTTPI
LPYTAPKKKLPSSAFSKEQKEPMSVSEAVWTASVGGRATTTTATATATGDEKKKTTTTPS
WKPVKESLFGRGVYIP
NT seq 4371 nt   +upstreamnt  +downstreamnt
atgctgacccccgtccgctgccggacggtaccaaatgcgactgttgcgaccgccgcccga
gtccttcgccgagccaacctcttttcccgatatcctcgacagctcggacacctacgatgg
gactcgactatcgcccaagtgctcgagcgcaagggcctcggcgtcccctccacagcgcgc
cataacgagatcggtgtccagcagctcagcgagcacctctacaagcagcttttcccccgc
ggaaacaccgaccctcctgctcccgaactcatcgagctggccaaggaccaccttgcccgc
catgacttgctgggaaagaccaccgataagactcctcctatcgcatttcaactaccggcc
ttggtgggcgataccctcgacgaacacttccacaagctgggcgtcgacgccgccgaaccc
ttccttacccatgccaagcagttcgcagacgcccatctaccccccaagccgacgagttgg
gtacggaggagtggctggacaaaatacaaccgcgatggcacgaccgagaacgacgtcctg
ccccagggcaacatgatgtgcttcgatgtggaggtcatgtataaggataacccctatgct
gtcatggcatgtgctggtactccggatgcctggtatgcctggctgtcgccgtggctgctt
ggagagacggaaaataaggcccagttggtaccaatgggcgatccaaccgtcgacagaatc
atcgtgggtcacaacattggctacgaccgtgccaagatactggaggaatacgacctgaag
cagacgaggaacttctttcttgacaccatgtctctgcatgtcgctgtgaacggaatgtgc
tcccaacaacgaccgacgtggatgaaacacaagaaagccagagaactacgggagaaggca
gagcatgaaagtgccagtgtagaactgcaagaagtcttgcagggcggttccctcacggcc
gaggaggccgacctctgggtcgataaaagctccatcaactcgctaagagacgtggcccaa
ttccacctcaacgtcaagatcgacaaggatatcagggatgtctttgcggaaacagatcga
aatgtgattctgaaccagctggacgatctcctgacttactgtgcggcagatgttcaagtc
acccaccaggtttaccaggtcgtgttccctaactttctcggagtctgtcctcatcccgtc
agctttgccgctctacgccacctcgcctccgtcattctgcccgtcaacaagacttgggat
acttatatcgagacagcggaggcaacatacctgcaaatgttacacggcgttcaggagcgc
cttttcactctgatggagaggacgctggattataaggccgaccctgaaaaatatctttct
gatccttggttgagccaactagactggtcaggacaggagatcaagatggccaagcccaag
aaaaagggcgacgtggaacggccagccctgaatcagaaactaccaggctatccccaatgg
tacaaggatctgtttgtaaaggttcccaaggagctctcgggcttggacgaacccgacaaa
gagcaggaaaatagaaaggctcgacatgaattcatcaatctcaccgtccgttcacggata
gccccgttgctcctcaaattatcatgggaaggctaccccttattctggtccgatcaattt
ggctggacgttccaggtcccacgagaaaaagcagagacctttattcagcgccagatgaca
cctgttcaatttgaggacccagatgtcgatgatcgacttaggatggatgttgatcacaag
tacttcaaacttcctcacaaagatggcccgaacgctagatgtgtcaacccaatggccaag
ggttatcttccctactttgaaaagggcatcctttcttccgagtacccctacgcaaaggaa
gccctggaaatgaatgcttcttgttcatactggatcagtgctcgagagagaatcaagaat
cagatggttgtctatgaagatcagcttcctccgtctcagagatttgtcaacaaggatgca
gacagcaacacccctattggcggctttgttcttccccaggtcattcctatgggtaccatt
actcgtcgtgctgtcgagagaacatggttgacggcatccaatgccaagaagaaccgtgtt
ggatcagagctcaaagccatggttcgcgcaccaccaggttatgtctttgtcggtgccgat
gttgactcggaagaactttggattgcctctgttgttggagacgctactttcaaactgcat
ggtggtaatgccatcggcttcatgacccttgagggtaccaaatcccagggcactgatctc
cacagtcggacggcttccattctgggcatcacccgtaatgacgcaaaagtgtttaactat
ggccgtatctacggcgccggtctcaagttcgcatctcagcttctccggcagttcaaccct
agcttgaccgaggcggaaacgactgccatcgcgacaaagctctacgatgccaccaaaggt
gccaaaactaaccgcaagagcctttacaagcggcccttctggcgaggcggtaccgagtcc
ttcgtgtttaacatgcttgaagagtttgccgagcaagagcgtcctcgtaccccggttctc
ggtgcgggcatcacagaggccctcatgagccgctgggtcagcaaaggcgggttcctgact
tcgcgtatcaactgggccatccaatctagtggtgtcgattaccttcacttgctcatcatc
gctatggactatctcactcgccgcttcaacctcgcctgccggttggccatcactgtgcac
gacgaaatccgctatcttgccgaggaacctgacaaataccgggtagccatggcactgcag
attgccaacctgtggactcgtgtcatgttcgcgcagcaagtcggcattcaagatctaccg
cagtcctgcgccttcttcagcgctgtggacatcgaccacgtgcttcggaaggaggtcgac
atggattgtatcacgcctagtaacccgatacccattgcgcacggcgagagcatcgatatc
ttccagatcctggagaagggagacgacgcaaagctggatgacagcattgtccctcagtct
caatatgcacctcgcctggagaacatcccgtatacgcctcgtgtgcctgtgatgcagagg
cttcgcgagagggccgaggccggcgatcaccaagccttccttcggttcatccgggcacag
attaccaattccgatgaagagctgaagaggatcatcgcagagacaaggtatagtgaccca
tatggtgccttttccctggcttcgaatggaagagtatcaggcaatccacatcagcggcat
gccgctgtacatgcttcgacaaagacggctgcggctccttcaaaaccttccatcgcaagt
cgtttcgattccgtctcgcaggcatcgaggatcaagtccgtcgcagctggcagtgatgag
cccaccatcagagcgaccaaagcgcagggcaaagccatggcaaaagccagtggtacaaaa
cttgctgcctccacgaaggataccgtcctcaacgtaacgatcaagaagaaggtggcggcc
cccgagatggcggctgttccgtcaacctcttctgaatctaagtccaaggcttcagccaca
acaagcacgacaaccaccgagaacgccaccgcatccccttcatcctcatcgaacgtcgat
gcaaagaaaaccacatccaaaaccaagccgacccacaagaaggagactgaaggggaacca
tttccctcccttgacgaccccgtcatcgccgcccgcctcgaagccgtctccaagacttca
ccagggaccagggcttccgtcgccgcgaagctagacgcccttgcctccttttccatgcga
gctgctgcggctgctgaggctgctgtcaccaccaccactactccagagccgccaaccaac
cctccccccgttgctcccaaggcaaaggaacccacaaccaccatggcagaaaaggtcttg
aaacctaccgccgtccccaaaaaccccactcctactctcacgcccaccaccaaaaagtct
aatcccacatccacaccaaccacaccaaaacccgtcggccgtccccgcaccacccccatc
ctcccctacaccgctcccaagaaaaagttgccctcgagcgcgttttccaaagagcaaaag
gagcccatgtcggtgtcggaggctgtatggactgcgagtgttggtggtcgtgctacgact
actacagcgacggcgacggcgacgggtgatgaaaagaagaagacaacgacgactccaagc
tggaaaccggtgaaagagagtttgttcgggcgaggggtttatattccttga

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