KEGG   Neurospora crassa: NCU01643
Entry
NCU01643          CDS       T01034                                 
Name
(RefSeq) 5'-3' exoribonuclease 2
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ncr  Neurospora crassa
Pathway
ncr03008  Ribosome biogenesis in eukaryotes
ncr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ncr00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    NCU01643
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NCU01643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ncr03021]
    NCU01643
   03019 Messenger RNA biogenesis [BR:ncr03019]
    NCU01643
   03009 Ribosome biogenesis [BR:ncr03009]
    NCU01643
   03016 Transfer RNA biogenesis [BR:ncr03016]
    NCU01643
Transcription machinery [BR:ncr03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     NCU01643
Messenger RNA biogenesis [BR:ncr03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     NCU01643
Ribosome biogenesis [BR:ncr03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    NCU01643
Transfer RNA biogenesis [BR:ncr03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    NCU01643
SSDB
Motif
Pfam: XRN_M XRN_N DUF4599 zf-CCHC_2
Other DBs
NCBI-GeneID: 3872420
NCBI-ProteinID: XP_956265
UniProt: Q8WZX5
Position
II:2831269..2835334
AA seq 1072 aa
MGIPAAFRWLSTKYPKIISPVIEDQPITMPDGTVIPVDATKPNPNGEEFDNLYLDMNGIV
HPCSHPEDRPAPKDEEEMMVEVFKYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRF
RAAREAMEKEEDKQKFVELLKKQNGKPQEEEPVEVVVKKAFDSNSITPGTPFMDILAASL
RYWCSYKLNTDPAWANIKVIISDATVPGEGEHKIMEFVRSQRGSPNHDPNTRHVIYGLDA
DLIMLGLATHEPHFRVLREDVFAQDSRPRLCKICGQKGHDAMNCKGEAKEKNGEFDEKDA
VVPLKPFIWLHVSILREYLAIELDVPGLPFQFNLERAIDDWVFMCFFVGNDFLPHLPALE
IRENGIDTLTAIWKDNLPVMGGYLTKDGHADLERVQYIMAGLAKQEDAIFRRRKETEDRR
EAGFKRRKLADEARQRRAQGSRQIRQAAENSGPPAGFSFHKINEFPGKAPQPSITHDMVV
NRQAVDQANVANKSAASVLKDQIKSMMAQGTSTPENGAESTETPAETAAAAPATEEQAAP
PAALGKRKAELIEDAVAGPEASSTEVTEISESDAEPTDSVRLWEEGYADRYYEQKFKVDR
KDIDFRHKVGRAYAEGLAWVLEYYFQGCPSWEWFYPYHYAPFAADFVDLGKMEIKFEKGR
ISRPFEQLMSVLPAASRHAIPEVFHSLMLEETSEIRHFYPDDFEIDLNGKKMAWQGVALL
PFIDMPRLLAAMETKSHLLSPEDHLRNAPGKDYLLLSDSHPTLYDHITSQFYSKKQGTTK
FELDPTKSAGLSGLVEKIDGYVPHGSLVYPLSRNSMPDVDYDRSLMVHYFFPDCSHTHKS
MLLRGVQMPTPALTRSDIDILKGKASRSGRSYGGVPLSNKNYSGRNEPINYGPGGGQQGG
RGRGGYQGGGGRGGGRGGYGGNGGGYQANGGGYYNGGNNGGGGGGYGGQPRDSYGPPPGW
QPPPPPGLAGFGVGPPPPPPGAAYGGAPGGAGYGGYGSSRGGYQDNRYALPPPPPQAYQA
QGQQYGQGGSRGGYQGQGNQYRGPPRQDRGYDNRGGYRGGGYRGGGDNRGYR
NT seq 3219 nt   +upstreamnt  +downstreamnt
atgggtattccggcggctttcaggtggctgtccaccaagtatcccaagatcatctcgccc
gtcatcgaggatcagccgattactatgcccgatggcaccgtcattcctgttgacgcgacc
aagccaaatcccaatggcgaggagtttgacaacctgtatctcgacatgaacggcatcgtc
catccttgctctcaccccgaggaccgccccgcgcccaaggacgaggaagagatgatggtc
gaggttttcaagtacaccgatcgcgtcgtcaacatggttcgcccgcggaagcttctcatg
attgctgttgacggcgttgcccccagagccaaaatgaaccagcaacggtccagacgattt
cgcgctgcccgggaagccatggaaaaggaggaagacaagcaaaagttcgtcgagctgctc
aagaaacagaacggcaagccccaagaggaagaacccgtagaggtcgtcgtcaagaaggct
ttcgattccaactccatcactcctggtacgcccttcatggacatcctggctgccagtctc
aggtattggtgttcctataagctcaataccgatcctgcctgggccaacatcaaggtcatt
atctctgacgccaccgttccgggtgagggtgaacataagatcatggaattcgtccgctcc
cagcgtggttcccccaaccatgaccccaatactcggcatgtcatttacggactcgacgcc
gaccttatcatgcttggcttagccacgcacgagccccatttccgtgttctgcgtgaagac
gtctttgcccaagacagcaggccgagactgtgcaagatttgcggtcaaaagggacatgac
gccatgaactgcaagggcgaggcaaaggagaagaatggcgagttcgacgagaaggacgca
gtcgtgcctctcaagccctttatctggctccacgtttccattctccgtgagtaccttgcc
attgaacttgacgttcctggccttcccttccagttcaacttggaaagggccatcgacgat
tgggttttcatgtgcttctttgtcggaaacgatttcttgcctcacttgcctgcattggag
atcagggagaacggaattgataccctaacggccatctggaaagataacttgcccgtaatg
ggcggatatttgaccaaagatggccatgcggaccttgaacgtgtccagtacatcatggcc
ggcttggccaagcaggaagatgccattttcaggaggagaaaggaaaccgaagaccgacga
gaggccggtttcaagaggcgcaagcttgccgatgaggcccgacaaaggagagcccaaggc
agtaggcaaatacgtcaggcggctgagaatagtggtccgccagctggattttcctttcac
aagattaacgaatttccgggcaaggctccgcaaccatcaatcactcatgacatggtggtg
aaccgccaggcggttgaccaggccaatgttgccaacaagagtgccgctagcgtgctcaag
gatcagatcaagagcatgatggcgcaaggaacgagcactccagagaacggtgctgagtcc
actgagactcctgctgaaactgctgcggccgccccggccaccgaagagcaagctgctccc
ccagcagccctgggtaaaaggaaggctgagcttatcgaagatgctgtcgctggtcccgag
gccagcagtaccgaggtgaccgagatcagcgagagtgatgctgagcctaccgattcggtc
aggctgtgggaagagggctatgcggaccggtactatgagcagaagttcaaggttgaccgt
aaagacattgatttccgtcacaaggttggccgtgcgtatgccgaaggtcttgcgtgggtt
ctggagtattatttccagggctgcccctcatgggagtggttctacccctaccattacgcg
ccgttcgctgcggactttgttgatcttggcaagatggagatcaagtttgagaagggcaga
atttcgcggccatttgagcaactgatgagcgtccttccggccgcgtctcgtcatgccatc
cctgaggtgttccactccttaatgttagaggagaccagtgagatccgccatttctacccc
gatgacttcgagattgatctcaacggcaaaaagatggcttggcagggtgtcgccctcctt
cccttcatcgacatgcctcgtctattggctgccatggagaccaaaagtcatctcttgagc
ccagaagatcacctccggaatgcaccgggcaaggattatctacttctatctgattctcac
ccaacactgtacgatcacatcacgagccagttctactccaagaagcagggtacgaccaag
ttcgagctggatcccacaaagagtgctggcctctcaggcttagtcgagaagattgatggc
tacgtgcctcacggctcgctggtctacccgttgagcagaaactcaatgcccgatgtggat
tacgatcggtcactcatggttcactacttcttccctgattgctctcatacgcacaagtcg
atgctcctaaggggagtgcagatgccaacacccgctttgacccgaagcgatatcgacatc
ctgaagggcaaggcatcgcgctcaggaagaagctacggcggcgtaccgctgagcaacaag
aactacagtggaaggaacgagcccatcaattacggacctggcggtggtcagcagggagga
cgcggccgcggcggttaccaaggtggtggaggacgcggtggaggtaggggaggatatgga
ggaaacggcggcggctaccaagctaatggtggtggttattacaacggtggtaacaacggc
ggcggcggtggcggatacggcggtcaaccacgggactcgtatggccctcctcccggctgg
cagcctcctccgccccctggacttgctggatttggggttggacctcctccgcctccgccc
ggtgccgcgtatggcggtgctcccggtggcgctggttacggcggttacggcagcagtcgc
ggagggtatcaagacaacagatacgcactcccgcctcctccgccgcaagcgtatcaggca
caggggcagcagtacggccagggcgggagccgcggcggctaccaaggccagggtaaccaa
tacagaggaccaccgcgtcaggatcgcggatatgacaaccgcggaggttaccgcggcggt
ggatatcgtggcggcggtgacaaccgggggtataggtaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (40)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (60)   

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