KEGG   Neurospora crassa: NCU05267
Entry
NCU05267          CDS       T01034                                 
Name
(RefSeq) nonsense-mediated mRNA decay factor
  KO
K14327  regulator of nonsense transcripts 2
Organism
ncr  Neurospora crassa
Pathway
ncr03013  Nucleocytoplasmic transport
ncr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ncr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    NCU05267
   03015 mRNA surveillance pathway
    NCU05267
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncr03019]
    NCU05267
Messenger RNA biogenesis [BR:ncr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     NCU05267
   mRNA cycle factors
    P-body specific factors
     NCU05267
SSDB
Motif
Pfam: MIF4G Upf2 DUF5713
Other DBs
NCBI-GeneID: 3877905
NCBI-ProteinID: XP_961757
UniProt: Q7S858
Position
IV:complement(5532449..5537507)
AA seq 1140 aa
MDRQRRRELRALNSRAWNGEKDLFPVSKSLDSTLKKNTAFIKRLRTTISAATQSTFLQEI
RTVSLSKYLSEIISACYEGLCKLKSPGDIEAGVEIVSALHQRFGPADFTEHLGWLLGKGM
ATPDKSFLKTLTPEAREKEEKDRLVRQRVLLRVVTELWLVDVLRTLDDIARPDDATRPTT
GARAEPKPRSSSGKGGGAEPFPLEVLKDLLNHDRDHANLPLLVIFVKAFSWDILGIKAAG
QDGRKTVEEDGATKGAEETEGDGSEDKEEGAGADQDGPFAPPELQERFKNILKRYFEDVK
GHLVRDQKAIYNQSRKNAEAYVKSGEVFEDRQSNFEKQVKAQERLVANAQVIADIIGAEM
PELKDTDEGNAANGTIGLVKAGEYLRGQGEGPGIWEDEEERRFYENLVDLKGKVPGILLE
EVKKKKADDEQVGRKIDPVEAAEAAKAAEAAAADDQSIAIANKTIGAQVDALLVRLPELI
SKDAIDQMAIDFCFLNSKASRNRLIKALTDVPKGRTDLLPNWARLVATLGQYMPDIPKGL
VDYLDNEFRSLQRRKEKEFLGQVRLSNIRYLAELTKFGIVPEHVVFHCLKVSLDDFSRMN
IEIICNLLENCGRYLLRNPETSPRMASFLETLQRKKSVQHIGQAERMLIENAVYYVDPPQ
RPAIEVKERTPMELFIRKLIYGDLTKRNYSKILRHIRRLHWEEKDVVAILHKVFSKPGKV
KYGNIHLLAILLSALYKYHGEFVVGVIDQVTESICLGLESNDFKFNQRRIAEVKYLGELY
NYRMLEHPVIFDTMYKIMTFGHGGPPVPGRVNPFDLPDDFFRIRLISTILETCGMFFNKG
AAGKKLDFFLSFFQYYIYTKNPLPMDVEFLVQDIFALTRPQWKLASNLEEASKVFQLAMV
QDQKTSGVERVVEPEDNDSDVSDDEDGMVPDEDEDDESDDDDGGEAEDNEQQDNTSRYNS
ESEEEEIVVTRQQEEVDPEEEAEFEREFAKMMAESLDSRKFERKQQFDLPLPIKLKPRES
TAVGESSAANEAGPSEAPPSGEKMAFSLLTKKGNRQQTRTVELPSDSHFAIAMKKKQQAE
KEEQQRIKNLVLNYDLRENDDYEGNEKLNAHHHNRSDLRLNKERGGQRVRKLQLSDVDWT
NT seq 3423 nt   +upstreamnt  +downstreamnt
atggatcgccaaagacggcgtgagctgcgggcgctgaactcgagggcttggaacggcgag
aaagatctctttcccgtcagcaagtccctcgactctaccctaaagaaaaacactgctttt
atcaagcgtctccgaaccaccatctccgccgccacccagagcaccttcctccaggagatc
cgcaccgtcagcctctccaaatacctttccgaaatcatctcagcatgctacgagggcctc
tgcaagctcaagtctcccggagacatcgaggccggcgtcgagatcgtcagcgccctgcac
cagcgattcggacccgccgactttaccgaacacttgggctggcttctgggcaagggcatg
gccactcctgataagagtttcctcaagacccttacccccgaggcgagagagaaggaagaa
aaagaccgcttggttcgacagcgcgttctcctccgcgtcgtgaccgagctctggcttgtt
gatgttctgcggaccctggacgatattgctcgccccgacgacgctacgagaccgaccacg
ggagccagagccgagccgaagccgcggtcttcttccggcaagggaggcggtgccgagccc
tttccactcgaagttctgaaggatctcttgaatcacgatcgagaccacgccaacctcccc
ttgctcgtcatctttgtcaaggctttcagttgggatatcttgggcatcaaggctgcgggc
caagatggtcgtaaaaccgtggaggaggatggcgctaccaagggcgccgaggagaccgaa
ggcgacggatccgaagacaaggaggaaggtgccggcgcggatcaggacggtccctttgcc
cctcctgagttgcaggagcgcttcaagaatatcctcaagcgctactttgaggacgtcaag
ggccaccttgttcgggaccaaaaggctatctacaaccaatcgcgcaagaatgcggaggcc
tatgtcaagtcgggagaggtctttgaggatcgccagtcaaactttgagaagcaggtcaag
gcccaagaacgtctcgtggccaatgcgcaggttattgccgatatcattggcgcggagatg
cccgagttgaaggatactgatgagggcaacgccgcgaacggcacaatcggcctggtcaag
gctggtgagtacctccgtggacagggtgaggggcccggaatctgggaggacgaggaagag
cgtcgcttctacgaaaacttggttgatctgaagggcaaggtccctggcattctgcttgaa
gaagttaagaagaagaaagcagatgacgaacaggtgggcaggaagattgaccctgttgaa
gccgcggaagctgccaaggcggccgaggctgctgccgccgatgaccagtctattgctatt
gcgaacaagacaattggcgctcaggttgacgccctgcttgtgcgccttcctgagctcatc
agcaaagacgccattgaccagatggctatcgacttctgcttcctcaattcgaaggcgtct
cgcaaccggctcatcaaggccttgaccgatgtgcccaagggacgtaccgatctcctcccg
aactgggctaggctcgttgccacgcttggtcaatacatgcccgatatccccaagggcctc
gttgactacctcgacaatgagttccgtagtcttcagcggcgcaaggaaaaggagtttctt
gggcaggtcaggctgagcaacattcgctacctggctgagctgaccaaatttggcattgtt
ccggagcacgttgtcttccactgtctcaaggtcagtttggatgacttttcgcggatgaac
attgagatcatttgcaacctgcttgagaactgcggccggtacctgctgcgcaacccggag
acttctccgcgcatggcttccttcttggagacgctgcagcgcaagaagtctgtccagcat
attggacaggccgagaggatgctcattgagaacgccgtctactatgttgatccgccgcag
cgccctgccatcgaggtgaaggagagaacgcctatggagctcttcatccgcaagttgatt
tatggcgatctcaccaagaggaactacagcaagatcttgaggcatattcgcaggctgcac
tgggaagagaaggatgtcgttgcgattttgcacaaggtcttctccaagcccggaaaagtc
aagtatggtaacatccatctcttggccatcctgttgagcgccctctacaagtatcatggc
gagttcgttgtcggagtcatcgaccaagtgaccgagtctatctgcctcggcctggagtcg
aatgacttcaagttcaaccagcgtcgcatcgctgaggtcaagtaccttggagagctctac
aactacagaatgctggagcacccggtcatcttcgacaccatgtacaagatcatgacgttt
ggtcacggcggcccgcccgttccaggccgcgtcaacccctttgatttacccgatgacttc
ttccgcattcgcctcatctccaccatccttgagacgtgcggtatgttcttcaacaagggc
gctgctggcaagaaactcgatttcttcctctccttcttccagtactacatctacacgaag
aatccgctgcccatggacgtcgaattcctcgtccaggacatcttcgccctcacccggccg
cagtggaagcttgcctccaacctggaggaggcgtccaaggtgttccagctggccatggtt
caggatcaaaagacatctggagtcgagagggtcgtcgagccggaggacaacgatagtgac
gtgtccgacgatgaagacggcatggtcccagatgaagatgaggacgacgagtcggacgac
gatgatggtggcgaggctgaggacaacgagcagcaggataacacgtcgaggtacaacagc
gaatctgaagaggaggaaattgtcgttaccagacagcaggaggaggttgatcccgaggag
gaggctgagtttgagcgcgagtttgccaagatgatggccgaaagcctggattcccgcaaa
ttcgagcgcaagcagcagtttgacctgccgcttcccatcaagctcaaacctcgtgagtct
acggctgttggcgaatcctctgctgccaacgaggccggaccctcggaggctcctccctct
ggggagaagatggctttttcgcttctcacgaagaagggtaatcgccagcagactcgcacc
gttgaactgccttcggactcgcactttgctattgctatgaagaagaagcaacaggcggag
aaggaagagcagcagcgcatcaagaaccttgtcctgaactatgatctccgggagaacgat
gattatgagggtaacgagaaactcaacgctcatcaccataaccgctccgatcttaggttg
aacaaggagcggggtggacaaagagtgagaaagttgcagcttagtgatgttgattggact
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (42)   

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