KEGG   Neurospora crassa: NCU09076
Entry
NCU09076          CDS       T01034                                 
Name
(RefSeq) ATP-dependent RNA helicase
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:3.6.4.13]
Organism
ncr  Neurospora crassa
Pathway
ncr03013  Nucleocytoplasmic transport
ncr03015  mRNA surveillance pathway
ncr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ncr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NCU09076
  09122 Translation
   03013 Nucleocytoplasmic transport
    NCU09076
   03015 mRNA surveillance pathway
    NCU09076
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ncr03019]
    NCU09076
   03041 Spliceosome [BR:ncr03041]
    NCU09076
Messenger RNA biogenesis [BR:ncr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     NCU09076
Spliceosome [BR:ncr03041]
 Complex C
  Other components
   EJC/TREX
    NCU09076
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    NCU09076
SSDB
Motif
Pfam: DEAD Helicase_C ResIII DUF4844 CMS1
Other DBs
NCBI-GeneID: 3881069
NCBI-ProteinID: XP_964893
UniProt: Q7RW10
Position
I:complement(767193..770372)
AA seq 434 aa
MSAEEDLIDYSDDELNNDSAAPTNGKKAEAVPAGQTVDTKKGSYVGIHSTGFRDFLLKPE
LLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECS
VLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVGTP
GRLNALVRDKHLRLGSVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSD
EIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIPLEEREKNRKLNELLDELQFNQVIIF
VKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDI
ERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVTTDQDKEVLKAIEKRFEVALPE
FPKEGIDASTYMAS
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgtccgccgaggaagatctcatcgactactctgacgacgagctcaacaacgactccgcc
gctcccaccaacggcaagaaggccgaggctgtccccgccggccagactgtcgacaccaag
aagggctcctatgtcggcatccactcgactggcttccgcgactttctgctgaagcccgaa
cttcttcgcgccattgccgattgcggcttcgagcatccctcggaggttcagcagacatgt
atcccccaggccatgcttggtggtgatatcatctgccaagccaagtccggtctcggtaag
acggctgtcttcgtccttaccactcttcagcaagttgagcccgtcgccggcgagtgctct
gtcctcgtcatgtgccacactcgtgagctcgctttccagatccgcaacgagtacaaccgc
ttcagcaagtacatgcccgacatcaagaccggcgtcttctacggtggtactcccatccag
aaggatgccgaggttctcaagaacaaggagacccatccccacatcatcgtcggtactccc
ggtcgtctcaacgccctggtgcgcgacaagcacctccgtctcggaagcgtccgcatgttc
gttctcgatgagtgcgacaagatgctcgaccagatcgacatgcgccgcgacgttcaggag
attttccgcgccactccccagcagaagcaggtcatgatgttctccgctaccctgtcggac
gagatcaagcctatctgccgcaagttcatgcagaaccctaccgagcactacgttgacgaa
gacaccaaattgacccttcacggtcttcagcaatactacattcctcttgaggagcgcgag
aagaaccgcaagctcaacgagcttctcgacgagctgcagttcaaccaggtcatcatcttc
gtcaagagcactctccgtgctaccgagctggacaagcttttgcgcgagtgtaacttccct
tcgatcgctgtccactccggtgtgagccaggaggagcgtatccgtcgttacaaggaattc
aaggaattcaacaagcgtatctgcgtcgccactgacgtctttggtcgtggtatcgatatc
gaacgcatcaacctcgccatcaactacgatctccccgccgatgccgactcttacctccat
cgtgtcggtcgtgctggtcgtttcggtaccaagggtcttgccatctccttcgttaccact
gaccaggacaaggaggtcctcaaggctattgagaagcgcttcgaggttgctcttcctgag
ttccccaaggaaggtatcgatgcctccacctacatggcttcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (32)   

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