KEGG   Neptunomonas concharum: F0U83_12140
Entry
F0U83_12140       CDS       T06194                                 
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
ncu  Neptunomonas concharum
Brite
KEGG Orthology (KO) [BR:ncu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ncu03016]
    F0U83_12140 (thpR)
Enzymes [BR:ncu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     F0U83_12140 (thpR)
Transfer RNA biogenesis [BR:ncu03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    F0U83_12140 (thpR)
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: QEQ97403
UniProt: A0A5P1RCS3
Position
complement(2578767..2579327)
AA seq 186 aa
MRIRTFFALRLADSVVRQLADQADGLCAYDRKLEVNWVDSDHYHLTLCFLGDTGLDQIDR
LEGLAKRHLEEEQSFQVCLEQVDYYEINPKVSLIAALPAENDKLISLQKRVADVVEEAGI
KNDPADFTPHITLGKLPRKNKFKQPEQWPNLELYSLADSVVLFQSKQGEHGSVYTPLFEV
ELQDLD
NT seq 561 nt   +upstreamnt  +downstreamnt
atgaggattcgaacatttttcgctttaaggctggcagactctgttgtaagacagctggca
gaccaagccgatggtttatgcgcctatgatcgtaaactggaagttaactgggttgattct
gatcactaccacctgacgctctgttttttgggagataccggattagatcaaattgatcgt
cttgaaggcttagctaaaagacatctggaagaagaacagtcgtttcaggtatgtttggag
caggtcgattattacgaaatcaaccctaaggtttccttgatagcggcgctgccagcagag
aatgataagctgatctctctgcaaaagcgggtagcggatgtggttgaagaagcgggtatt
aaaaacgaccctgctgactttacgccgcatatcacgctgggaaaattacctcgcaagaat
aaatttaaacagcctgagcaatggcccaatttagagctttatagtttggctgactctgtt
gtgttgttccaaagcaaacagggtgagcatggctctgtttataccccattatttgaagtc
gaattgcaagatcttgactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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