KEGG T01248: Ndas

Nocardiopsis dassonvillei: Ndas_0627

Entry

Ndas_0627         CDS       T01248

Name

(GenBank) exonuclease

K03546

DNA repair protein SbcC/Rad50

Organism

nda Nocardiopsis dassonvillei

Brite

KEGG Orthology (KO) [BR:nda00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nda03400]
    Ndas_0627
DNA repair and recombination proteins [BR:nda03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Ndas_0627
    Archaeal homologous recombinant proteins
     Ndas_0627

SSDB

Motif

Pfam:

AAA_23 SbcC_Walker_B AAA_27 AAA_29 SMC_N ABC_tran AAA_22 AAA_11

Other DBs

NCBI-ProteinID:

ADH66073

UniProt:

D7AXJ9

Position

1:complement(770074..773061)

AA seq 995 aa
MRLHTLTVQAFGPFAGTEEVDFDRLSAGGLFLIHGPTGAGKTTVLDAVCFALYGNVPGAR
GKDRSPKSDHAPLDAEPRVVLEFTVQGRRIWIERKPRWDRPKKRGTGTVSQNTKVVVKEF
TGGRWEGVTTRPDEAGQFVGDLLGLTLAQFCQTVMLPQGDFARFLRAKSEERRESLERIF
NTRLFRDVETWLGAHAKRLEHEVRTANAQVRAVADRIAEVGGSRAPEPPEELSAWAAELA
CVTAATARDAGRVAGEFTGAREEAQRALSEGRELRALQERLAAARGRRAQLAEHTAWRAA
LDAQLDDAGRAESVLPFLRARDNRRTELDKAELAVADHLALVGGLPGFSARSDGAVPREE
LGAAERERRDELARLDALRADAERRRSLGRSVTALTGRLDEIAAQLDRQRALAASLPARV
EALTAELRRLHDQAGQEGAAETALAAARRRLDAAAEYERLGRELSEAQERHREAVDGAQA
ARDRALDLRERRITHMAAELASGLVDGEPCAVCGSVAHPSPARPSGEGLVSAEEERRAQA
AADAAASRRAEAESAAVALRERRTAARERAEDATADAARQEVEAHTAALAEARAAAGEAR
RVEEELERTTGDLERARTREGELVRQEAQVGADRDNAVREHGRLTALLDRARGDDAGLDE
RIARLGGEADLLRAAAEAAVNRDRAADELRAAVAEAERQRAEARFADEAGVWEAALDEER
RRALRERARSFDDALAAVEASLADPELTAAGELPVPDLEELARAARTASEAADRAVAWRS
MLEERARRLASLRGELDLRLRDCEPALRRYAVAEGLRGLTAGTSSDNADNVRLSAYVLAA
RLEQVVAAANDRLVTMSDGRYELRYTVDKAAGDGRARSAGGLGMRVVDAWTGVERDPATL
SGGETFFSSLALALGLGDVASAEAGGADIDTLFVDEGFGTLDEDTLEEVLDVLDRLRDGG
RAVGVVSHVADLRQRVSARLKVVKTAAGSRVEHTG

NT seq 2988 nt +upstreamnt +downstreamnt
atgcggctgcacaccctcaccgtccaggcgttcggcccgttcgcgggcaccgaggaggtg
gacttcgaccgcctcagcgcgggcggcctcttcctcatccacggccccaccggcgcgggc
aagaccaccgtgctggacgcggtgtgcttcgccctgtacggcaacgtgccgggcgcccgg
ggcaaggaccgctcccccaagagcgaccacgccccgctggacgccgagcccagggtggtc
ctggagttcacggtccaggggcgccgcatctggatcgagcgcaagccgcgctgggaccgc
cccaagaagcggggcaccggcacggtgtcgcagaacaccaaggtcgtcgtcaaggagttc
accggcggcaggtgggagggcgtcaccacccgccccgacgaggcggggcagttcgtcggc
gacctgctgggcctgaccctcgcgcagttctgccagaccgtcatgctcccccagggcgac
ttcgcgcggttcctgcgcgccaagtccgaggagcgccgcgagtccctggagcgcatcttc
aacacccggctgttccgggacgtggagacgtggctgggagcgcacgccaaacggctcgaa
cacgaggtccggacggccaacgcccaggtgcgcgcggtcgcggaccgcatcgccgaggtc
ggcgggtcccgggcccccgaaccgcccgaggagctgtcggcctgggccgcggagctggcc
tgcgtcaccgccgcgaccgcacgcgacgccgggcgggtggccggggagttcaccggggcc
cgtgaggaggcccagcgcgccctgtccgaggggcgtgagctgcgcgcgctccaggagcgg
ctggccgccgcccgcgggcgccgcgcccagctggccgagcacaccgcgtggcgggccgcg
ctcgacgcccagctcgacgacgccgggcgcgccgagtcggtgctgcccttcctgcgcgcc
cgcgacaaccgccgcaccgagctggacaaggcggaactcgccgtcgccgaccacctggcg
ctggtgggcgggctgcccggcttctccgcgcgctccgacggggcggtgccgcgcgaggag
ctgggcgccgccgagcgggagcgccgggacgaactggcccgtctggacgcgctgcgcgcg
gacgccgagcgccgccggtccctgggccgctccgtcaccgcgctcacggggcgcctggac
gagatcgccgcgcagctggatcgccagcgcgcgctggccgcctccctgcccgcccgggtg
gaggcgctcaccgccgagctgcggcgcctccacgaccaggccggacaggagggggccgcc
gagaccgccctggccgccgcccgcaggcgcctcgacgccgccgccgagtacgagcgcctg
ggccgggagctctcggaggcgcaggagcgccaccgggaggccgtggacggggcccaggcc
gcccgcgaccgcgccctcgacctgcgcgagcgccggatcacccacatggccgccgaactg
gcgtccggcctggtcgacggggagccgtgcgcggtgtgcgggtcggtggcgcacccctcc
cccgcccggccctccggcgagggcctggtctccgccgaggaggagcggcgggcccaggcg
gccgccgacgccgcggcctcgcgccgcgcggaggccgagagcgccgcggtggccctgcgg
gagcggcgcaccgccgcgcgggagcgcgccgaggacgccaccgccgacgccgcccgtcag
gaggtggaggcgcacaccgcggcgctggcggaggcccgggccgccgccggtgaggcccgg
cgggtggaggaggagctggagcgcaccaccggcgacctggagcgcgcccgcacccgcgag
ggcgagctggtccggcaggaggcccaggtcggggccgaccgggacaacgccgtccgcgag
cacgggaggctgaccgcgctgctggaccgggcgcgcggggacgacgccgggctggacgag
cggatcgccaggctgggcggcgaggccgacctgctgcgcgccgcggccgaggcggccgtc
aaccgcgaccgcgcggccgacgaactgcgcgccgccgtcgccgaggccgagcggcagcgg
gccgaggcccgcttcgccgacgaggccggggtgtgggaggccgcgctggacgaggagcgg
cgccgcgcgctgcgcgaacgcgcccgctccttcgacgacgccctggccgccgtcgaggcg
tcgctggccgatccggagctgaccgcggccggggagctgcccgtccccgacctggaggag
ctggcccgcgccgcgcggaccgcgtcggaggccgccgaccgcgcggtggcctggcggagc
atgctggaggagcgggcgcgtcggctcgcctccctgcgcggggagctggacctgcggctg
agggactgcgaaccggcgctgcgccgctacgcggtggccgaggggctgcgcggcctgacc
gccgggacctcctccgacaacgccgacaacgtgcgtctgtcggcgtacgttctggcggcc
cgcctggagcaggtggtggccgccgccaacgaccgcctggtgacgatgtcggacggccgg
tacgagctgcggtacacggtggacaaggccgccggggacgggcgcgcgcgttcggccggc
ggcctgggcatgcgggtggtggacgcctggacgggtgtggagcgcgacccggccacgctc
tcgggcggggagacgttcttcagctcgctggcgctggccctggggctgggcgacgtggcc
agtgccgaggcgggcggcgccgacatcgacacgctgttcgtggacgaggggttcggcacg
ctggacgaggacaccctggaggaggtgctggacgtcctggaccggctgcgggacggcggc
cgggcggtgggtgtggtgagccacgtcgccgacctgcggcagagggtgtccgcccggctg
aaggtggtcaagacggcggcgggctcgcgggtggagcacaccggctga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (29)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (44)   

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