KEGG   Naumovozyma dairenensis: NDAI_0F00680
Entry
NDAI_0F00680      CDS       T02234                                 
Symbol
NDAI0F00680
Name
(RefSeq) hypothetical protein
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ndi  Naumovozyma dairenensis
Pathway
ndi03008  Ribosome biogenesis in eukaryotes
ndi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ndi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    NDAI_0F00680 (NDAI0F00680)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NDAI_0F00680 (NDAI0F00680)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ndi03021]
    NDAI_0F00680 (NDAI0F00680)
   03019 Messenger RNA biogenesis [BR:ndi03019]
    NDAI_0F00680 (NDAI0F00680)
   03009 Ribosome biogenesis [BR:ndi03009]
    NDAI_0F00680 (NDAI0F00680)
   03016 Transfer RNA biogenesis [BR:ndi03016]
    NDAI_0F00680 (NDAI0F00680)
Transcription machinery [BR:ndi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     NDAI_0F00680 (NDAI0F00680)
Messenger RNA biogenesis [BR:ndi03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     NDAI_0F00680 (NDAI0F00680)
Ribosome biogenesis [BR:ndi03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    NDAI_0F00680 (NDAI0F00680)
Transfer RNA biogenesis [BR:ndi03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    NDAI_0F00680 (NDAI0F00680)
SSDB
Motif
Pfam: XRN_M XRN_N DUF5655
Other DBs
NCBI-GeneID: 11497129
NCBI-ProteinID: XP_003670630
UniProt: G0WC76
Position
6:163933..167037
AA seq 1034 aa
MGVPSFFRWLSRKYPKIISPVLEEQPQIVDNVKLPLDYSLPNPNGELDNLYLDMNGIVHP
CSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFRS
ARDAQIENEAREEILRQKEEIGEMIDDAVKNKKTWDSNAITPGTPFMDKLAAALRYWTAF
KLATDPGWKSLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLG
LATHEPHFKILREDVFAQDNRRRGNTLADSINMSEEEKRLIQEQDAQKPFLWLHISTLRD
YLSAELWIPRLPFPFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVL
PNLKTYMTCDGELNLESVEMLLKQLGSRESDIFKTRHIQEIRKQESIQRRKLQRQNGNNN
FATGQEQLQMHDTSGNLAKGSWNLTTSDMVRLKKELMLANEGDPEAIRDNKRLKVAKIDE
LTKNISNEEMDKVVDLANKSNFTAAEIMKKKLQARKHKLEEDEKKEKEEGAEAEAEEERS
KKKLKTEEDNLNEEISNEVEAENEDEESSVSGTATPSAVVVSNGPIKSGVIDTDEAVRLF
EPGYRERYYKAKCYVSDEDIESLRKGMVKSYIEGVSWVLLYYYQGCASWNWYYPYHYAPF
AQDFFGITDMDVKFELGEPFLPFEQLMSVLPAASGHTLPSIFRPLMSEPDSPIIDFYPAE
FPIDMNGKKMSWQGISLLPFIDEKRLLKTVREQYPKLTDYEKSRNVRKEAVLLISNKNAN
YEKFTKKLYKSVDGKIETAELLFHHFKSGLSGIVCTDSEGFTLGSKILCPVQGGSLPDLS
TNSLLKMTYKLLPLPSRNKSVILNGYIPPERVLNQYDLDSVMYKYNNNPRNNRWNFGDDM
KQNKIPVGPSGTTQYKPRVGGFRAFFFFGQQQQQQQQYHQQQQNVNITSGNTQYTNGTRY
QSNNNYNNRGRYNNNNTGRGGNYRNNSTNGRMNDQDGRGGSFRGGNNGNRYNNRNYSGNQ
RGNSSRYQGGPPRR
NT seq 3105 nt   +upstreamnt  +downstreamnt
atgggtgttccatcttttttcagatggttatcaaggaagtatccaaaaattatctcacca
gttcttgaagaacaaccccaaattgtggataatgtcaaattgccacttgattactcatta
ccaaatccaaatggtgaactagataatttatatctagatatgaatggtatcgtccatcca
tgttctcacccagagaacaaaccacctccagaaactgaagacgagatgcttttagccgtg
tttgaatataccaatcgtgttttaaatatggcaagaccaaggaaagtcttggtaatggca
gtcgatggtgttgcaccacgtgccaaaatgaatcaacaacgtgctcgtagatttagaagt
gctagagatgctcaaattgaaaatgaagctcgtgaagaaattctacgtcagaaggaggaa
attggtgaaatgattgatgatgctgttaagaataagaaaacatgggattcgaatgctatt
acaccgggaacaccatttatggataaattagcagcagctttgagatattggactgctttc
aaattggccactgatccaggttggaaaagtttacaagttataatcagtgatgctactgta
ccaggtgagggtgaacataaaattatgaatttcattagatctcaaagagctgatcctgaa
tataatccaaatacaacccattgtatttatggtctagatgcagacttgatctttttagga
ttggccactcatgaaccacatttcaaaatcttaagagaagatgtatttgcgcaagataat
agaaggcgaggcaacaccttagcagatagtattaatatgtctgaagaggagaaaagatta
atccaagaacaagacgctcaaaaaccatttttatggctacatattagtaccttaagggat
tatttaagtgcagaattatggattccaaggttaccattcccatttgatttggaaagggct
atcgatgattgggttttcatgtgttttttctgtggtaatgattttttacctcatttacct
tgtttagacgttcgagaaaatagtattgatattcttttagacatttggaaagttgtccta
ccgaatttgaagacttatatgacatgcgatggtgaattgaatttagagtcagttgagatg
cttttgaaacaactaggttctcgtgagagtgatatttttaagaccagacacattcaagaa
atcaggaaacaagaaagtattcaaagaaggaaattacaaagacaaaatggaaataacaat
tttgcaactggtcaagaacaattacaaatgcatgatacttctggtaacctagcaaagggt
tcttggaacttgacaacaagtgatatggtaaggttaaaaaaggagttgatgttagctaac
gagggtgatcctgaagcaatacgcgataataaaagactgaaagtagcaaaaatagatgaa
ttgactaagaatattagtaatgaagagatggacaaagttgttgatttggccaacaaatca
aacttcactgccgctgagataatgaaaaagaaattacaagctaggaagcataaattggaa
gaagatgagaagaaagaaaaagaagagggagctgaagctgaagctgaagaagagagatca
aaaaaaaaattgaaaacagaagaagataatttgaatgaagaaatttcaaacgaagttgaa
gcagaaaacgaagatgaagaaagcagtgttagcggaacagcaactccatctgcagttgta
gtttcaaatggcccaattaaaagtggtgttattgatactgatgaggctgttaggctcttt
gagcctggttatagagaacgttattataaagctaaatgttatgtctctgacgaagatatt
gaatctttaagaaaggggatggtgaaatcgtatattgaaggtgtttcttgggtgttgtta
tattattatcaaggttgtgcttcatggaactggtattatccataccattatgcaccattt
gctcaagatttctttggaataactgatatggatgttaaatttgaattaggtgaacccttt
ttaccatttgaacaactgatgagtgttttaccagcagcttctggtcatactttgccaagt
atattccgtccactaatgagtgaacctgattccccgattattgatttctaccctgctgag
ttcccaattgatatgaacgggaaaaagatgtcatggcaaggtatcagtttgttaccattt
attgatgagaaacgattattgaaaactgttcgtgaacaataccccaaattaactgattat
gaaaaatctaggaatgttcgtaaggaagctgtattattaatcagcaacaagaacgctaat
tatgagaaatttacaaaaaaactatataaatctgtcgatggcaagatagaaactgctgaa
ttattattccatcatttcaagagtggtctaagtggtattgtctgtactgatagtgaaggt
tttactttgggttcaaaaatattatgtccagttcaaggtggatcactgcccgatctttct
acaaattcactactgaaaatgacctataagctgttgccattaccttcaaggaataaatca
gttatattaaatggttatattcctcctgaacgtgtgttaaaccaatatgatcttgattct
gtgatgtacaaatacaacaataacccacgtaataatcgttggaattttggagatgatatg
aaacaaaataaaatcccagtaggaccaagtggtactacccaatataaaccaagagtcggc
ggattcagagctttcttcttctttggccaacagcaacaacagcaacagcaatatcatcaa
caacaacagaacgttaacatcacgtctggtaacacacagtatacaaatggtactcgatat
caatctaataacaattataataatcgtggaaggtataataataataataccggtcgtggc
ggtaattatagaaataatagtacaaatggtcgtatgaatgaccaagatggtagaggaggt
agtttcagaggtggtaacaatggtaatagatataataacaggaattatagcggtaatcaa
agaggtaactcaagtcgctatcaaggtggtccgccccgtcgttag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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