KEGG   Nocardioides dokdonensis: I601_0723
Entry
I601_0723         CDS       T04431                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ndk  Nocardioides dokdonensis
Pathway
ndk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ndk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    I601_0723 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ndk03021]
    I601_0723 (rpoB)
   03400 DNA repair and recombination proteins [BR:ndk03400]
    I601_0723 (rpoB)
Enzymes [BR:ndk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     I601_0723 (rpoB)
Transcription machinery [BR:ndk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     I601_0723 (rpoB)
DNA repair and recombination proteins [BR:ndk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      I601_0723 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 FH2
Other DBs
NCBI-ProteinID: ANH37173
UniProt: A0A1A9GHU3
Position
complement(744398..747871)
AA seq 1157 aa
MAARTASAVSRANRRISFAKIAEPLEVPQLLSLQTDSFDWLVGNDKWTEEVERRRANGDD
VSEKSGLTEIFEEISPIEDFSETMSLSFENPVFYDPKYTVDECKEKDFTYSAPLYVSAEF
TNNDTGEIKGQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERSADKTSDKDI
YTAKLIPSRGAWLEFEIDKRDLVGVRLDRKRKQNVTVLLKALGWTNEQIREEFGQYESMM
LTLEKDHTETQKDALLDIYRKLRPGEPPTEEAAQTLLNNYYFNPKRYDLAKVGRYKINKK
LGLTEAFDQQTLTVDDVVAAIRYIVALHDGQDQVEAPSGPLDVASDDIDHFGNRRMRTVG
ELIQNQLRTGLARMERVVRERMTTQDVEAITPQSLINIRPVVAALKEFFGTSQLSQFMDQ
TNPIAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSLAS
YGRINPFGFVETPYRKVVEGQVTDQIDYLTADDEDRFVIAQANAVLDDDLRFVNERVLVR
TRDGEVSEILAGEIDYMDVSPRQMVSVATALIPFLEHDDANRALMGANMQRQAVPLIRSD
SPLVGTGMEYRAAVDAGDVVVAEKAGVVKDVSADLVETMNDDGSYSSYKLAKFRRSNQGT
CINQRPLVVEGDRLEVGSPIADGPCTDEAEMALGTNLLVAFMPWQGHNYEDAIILSQRLV
QEDVLTSIHIEEHEVDARDTKLGPEEITRDIPNISEEGLADLDERGIIRIGAEVVTGDIL
VGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGESGTVIGVRVFDREDGDELP
PGVNQLVRVYVAQKRKISVGDKLAGRHGNKGVIAKILPIEDMPFMEDGTPVDVVLNPLGV
PRRMNIGQILELHLGWLAQQGWDLDLAEDTSDTDWKQRLIKIHAEKAEPRTKVATPVFDG
AREDEIIGLLGSTIPNRDGVRMIDGTGKADLFDGRSGEPFPDPVSVGYMYILKLHHLVDD
KIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGAAYALQELLTIKSDDVPGR
VKVYEAIVKGENIPDSGIPESFKVLVKEMQSLCLNVEVLSQDGTSIELRDAEEDVFRAAE
ELGIDLSRREPSSVEEV
NT seq 3474 nt   +upstreamnt  +downstreamnt
ttggccgcgcgcaccgcttccgccgtttctcgtgctaaccgccgcatctcgttcgcaaag
atcgccgaacccctcgaggttccccagctcctctctctccagaccgacagcttcgactgg
ctggtcggcaacgacaagtggaccgaggaggtcgagcgccgccgtgccaacggcgacgac
gtctccgagaagtccggtctgaccgagatcttcgaggagatctcgccgatcgaggacttc
agcgagaccatgtcgctctcgttcgagaaccctgtcttctacgaccccaagtacacggtc
gacgagtgcaaggagaaggacttcacctactccgcgccgctctacgtgtcggcggagttc
accaacaacgacaccggtgagatcaagggccagacggtcttcatgggcgacttcccgctc
atgacccccaagggcacgtttgtcatcaacggcaccgagcgcgtcgtcgtctcccagctg
gtccgcagcccgggcgtctacttcgagcgctccgcggacaagacgtccgacaaggacatc
tacaccgccaagctgatccccagccgcggcgcctggctcgagttcgagatcgacaagcgc
gacctcgtcggcgtccgcctggaccgcaagcgcaagcagaacgtcaccgtgctgctcaag
gccctcggctggaccaacgagcagatccgcgaggagttcggccagtacgagtcgatgatg
ctcacgctggagaaggaccacaccgagacgcagaaggacgcgctcctcgacatctaccgc
aagctgcgcccgggcgagccccccaccgaggaggccgcgcagaccctgctgaacaactac
tacttcaaccccaagcgctacgacctggccaaggtcggccggtacaagatcaacaagaag
ctcggtctgaccgaggccttcgaccagcagaccctgaccgtcgacgacgtcgtcgccgcg
atccgctacatcgtcgcgctgcacgacggccaggaccaggtcgaggcgccctcgggcccg
ctcgacgtggcctccgacgacatcgaccacttcggcaaccgtcggatgcgcacggtgggc
gagctgatccagaaccagctgcgcaccggtctggcgcgcatggagcgcgtggtccgtgag
cggatgaccacccaggacgtcgaggccatcacgccgcagtcgctgatcaacatccggccg
gtggtggcggcgctgaaggagttcttcggcacctcgcagctgagccagttcatggaccag
accaaccccatcgcgggcctgacgcacaagcgtcgcctgtccgcgctgggcccgggcggt
ctctcgcgcgaccgcgccggcatggaggtccgcgacgtgcacccgtcgcactacggccgc
atgtgccccatcgagacccctgaaggtcccaacatcggtctgatcgggtcgctggcctcc
tacggccgcatcaacccgttcgggttcgtcgagaccccgtaccgcaaggtcgtcgagggc
caggtcaccgaccagatcgactacctcaccgccgacgacgaggaccgcttcgtcatcgcg
caggccaacgccgtgctcgacgacgacctgcgcttcgtcaacgagcgcgtcctggtgcgc
acccgtgacggcgaggtctccgagatcctggccggcgagatcgactacatggacgtctcg
ccgcgccagatggtgtcggtcgcgaccgcgctcatcccgttcctcgagcacgacgacgcc
aaccgtgcgctcatgggcgccaacatgcagcgccaggccgtcccgctgatccgcagcgac
agcccgctggtcggcaccggcatggagtaccgcgccgcggtcgacgccggtgacgtggtc
gtcgcggagaaggccggagtcgtcaaggacgtctccgccgacctcgtcgagaccatgaac
gacgacggcagctactcgtcgtacaagctcgcgaagttccgccgctccaaccagggcacc
tgcatcaaccagcgtccgctggtcgtcgagggtgaccgcctcgaggtcggcagcccgatc
gccgacggcccctgcaccgacgaggccgagatggcgctgggcaccaacctgctcgtcgcc
ttcatgccgtggcagggtcacaactacgaggacgcgatcatcctctcccagcgcctggtg
caggaggacgtcctcacctcgatccacatcgaggagcacgaggtcgacgcccgcgacacc
aagctgggccccgaggagatcacgcgggacatcccgaacatctccgaggagggtctggcc
gacctcgacgagcgcggcatcatccgcatcggtgccgaggtcgtgaccggggacatcctg
gtcggcaaggtcacgcccaagggcgagaccgagctgacccccgaggagcgcctgctgcgc
gcgatcttcggcgagaaggcgcgcgaggtgcgcgacacctcgatgaaggtgccgcacggt
gagtccggcacggtcatcggcgtgcgcgtcttcgaccgcgaggacggcgacgagctgcct
ccgggcgtcaaccagctggtccgcgtctacgtggcccagaagcgcaagatctcggtgggc
gacaagctcgccggacgccacggcaacaagggtgtcatcgccaagatcctgccgatcgag
gacatgccgttcatggaggacggcaccccggtcgacgtcgtgctcaacccgctgggtgtg
ccgcgacggatgaacatcggtcagatcctcgagctccacctcggctggctggcccagcag
ggttgggacctcgacctcgccgaggacacctcggacaccgactggaagcagcggttgatc
aagatccacgccgagaaggcggagccgcgcaccaaggtcgcgactccggtcttcgacggt
gcgcgcgaggacgagatcatcggcctgctcggctcgacgatccccaaccgcgacggcgtg
cggatgatcgacggcaccggcaaggccgacctgttcgacggtcgctcgggcgagccgttc
ccggacccggtctcggtcggctacatgtacatcctgaagctgcaccacctcgtggacgac
aagatccacgcgcgcagcaccggcccgtactcgatgatcacgcagcagcccctgggcggc
aaggcccagttcggtggccagcggttcggcgagatggaggtctgggcgatggaggcgtac
ggcgccgcctacgccctgcaggagctgctgacgatcaagtccgacgacgtgcctggtcgc
gtcaaggtctacgaggcgatcgtcaagggcgagaacatccccgactccggcatcccggag
tcgttcaaggtgctcgtcaaggagatgcagtcgctgtgcctgaacgtggaggtcctctcc
caggacggcaccagcatcgagctgcgcgacgcggaggaagacgtcttccgcgccgccgag
gagctcggcatcgacctgtcgcgtcgcgagcccagctcggtcgaagaggtgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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