KEGG   Nocardioides dokdonensis: I601_2419
Entry
I601_2419         CDS       T04431                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ndk  Nocardioides dokdonensis
Pathway
ndk03030  DNA replication
ndk03410  Base excision repair
ndk03420  Nucleotide excision repair
ndk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ndk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    I601_2419 (ligA)
   03410 Base excision repair
    I601_2419 (ligA)
   03420 Nucleotide excision repair
    I601_2419 (ligA)
   03430 Mismatch repair
    I601_2419 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ndk03032]
    I601_2419 (ligA)
   03400 DNA repair and recombination proteins [BR:ndk03400]
    I601_2419 (ligA)
Enzymes [BR:ndk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     I601_2419 (ligA)
DNA replication proteins [BR:ndk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     I601_2419 (ligA)
DNA repair and recombination proteins [BR:ndk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     I601_2419 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     I601_2419 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     I601_2419 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      I601_2419 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH Prot_ATP_ID_OB_C DUF1990 Auto_anti-p27 BRCT_2
Other DBs
NCBI-ProteinID: ANH38837
UniProt: A0A1A9GKG8
Position
2519645..2521744
AA seq 699 aa
MSDPTPAGDAAREEHRRLAEEVEDARWRYYVLDSPTVDDADFDARVRRLEELEEAHPELR
TPDSPTQKVGGAVSTQFTAVDHLERMESLDNAFSFEELQAWHERLRRDGVDDPALLCELK
VDGLAINLLYEDGRLVRALTRGDGRTGEDVTPNVKTIDTIPHRLTGTEQFPVPELVEVRG
EVFLPVAAFERLNEAMTEAGKPVFANPRNAAAGSLRQKDPRVTATRALGMVCHGIGARRG
FEPRSQSQAYDALGAWGLPTSTRATVLATLGEVEALVAHHGEHRHDVEHEIDGVVVKVDD
VSLQRRLGSTSRAPRWAIAFKYPPEEVNTELLDIRVNVGRTGRVTPYGVMVPTRVAGSTV
ENATLHNAHEVRRKDVRPGDTVILRKAGDVIPEILGPVLALRPEGLEPWVMPTHCPACGT
ELAEQKEGDKDLRCPNHEQCPAQVRERVFHVAGRGAFDIEGLGYEAASALLDAGVITNEG
DVFDLTVDDLLRTELFTRAAKRTEADTATDGRVLSANGQRLLDHLQQAKQVPLWRVLVAL
SIRHVGPTAARALAQEFGSMARIREAAEEQLAAAEGVGPTIAEAVIEWFGVEWHRRIVER
WDAAGVTMQDERDESVPRTLEGLTIVVTGSLVDFSRDSAKEAILARGGKAAGSVSKKTDY
VVVGDNAGSKAEKAEQLGVPVLDEDGFKALLEQGPAQDS
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgagcgaccccaccccggccggagacgcggcccgcgaggagcaccgcaggttggcggag
gaggtggaggacgcgcgctggcgctactacgtgctggacagccccaccgtggacgacgcc
gacttcgacgcccgggtgcgccggctggaggagctggaggaggcccaccccgagctgcgc
accccggactcgccgacgcagaaggtcgggggagcggtctcgacgcagttcacggccgtc
gaccacctggagcggatggagagcctcgacaacgccttctccttcgaggagctgcaggcc
tggcacgagcggctgcgccgcgatggcgtggacgacccggcgctgctgtgcgagctgaag
gtcgacgggctcgcgatcaacctgctctacgaggacgggcgcctggtgcgggccctgacc
cgcggcgacggtcgcaccggcgaggacgtcacgcccaacgtcaagacgatcgacacgatc
ccgcaccggctcaccggcaccgagcagttcccggtgcccgagctcgtcgaggtgcgcggc
gaggtcttcctgccggtggccgcgttcgagcgtctcaacgaggcgatgaccgaggccggc
aagccggtcttcgccaacccccgcaacgccgccgccggctcgctgcgccaaaaggacccc
cgggtcaccgcgacccgcgcgctgggcatggtctgccacggcatcggggcccggcgcggc
ttcgagccccgctcccagtcccaggcgtacgacgccctgggagcctggggcctgcccacc
agcacccgggccacggtgctggccacgctgggcgaggtcgaggcgctggtcgcccaccac
ggcgagcaccgccacgacgtggagcacgagatcgacggcgtcgtggtcaaggtcgacgac
gtcagcctccagcgtcgtctcggctccacgagccgggcgccccgctgggcgatcgcgttc
aagtacccgcccgaggaggtcaacaccgagctgctcgacatccgggtcaacgtgggccgc
accggccgcgtcacgccgtacggcgtcatggtgccgacccgggtggccggctcgacggtc
gagaacgccaccctgcacaacgcccacgaggtgcgccgcaaggacgtgcgccccggcgac
acggtgatcctgcgcaaggcgggggacgtgatcccggagatcctggggccggtgctggcg
ctgcgccccgagggcctggagccgtgggtgatgcccacccactgccccgcctgcggcaca
gagctggccgagcagaaggagggcgacaaggacctgcgctgcccgaaccacgagcagtgc
cccgcccaggtgcgggagcgggtcttccacgtcgcgggtcgcggtgccttcgacatcgag
ggactcggctacgaggccgcctcggcgctgctcgacgccggcgtgatcaccaacgagggc
gacgtcttcgacctcaccgtcgacgacctgctgcgcaccgagctgttcacccgcgccgcc
aagaggaccgaggccgacaccgcgaccgacggccgggtgctctcagccaacgggcagcgg
ctgctcgaccacctgcagcaggccaagcaggtgccgctgtggcgggtgctcgtggcgttg
tcgatccgccacgtcggcccgaccgcggcgcgcgccctggcccaggagttcggctcgatg
gcgcggatccgcgaggccgccgaggagcagctggcggcggcggagggggtcggccccacg
atcgccgaggccgtcatcgagtggttcggcgtcgagtggcaccgcaggatcgtcgagcgg
tgggacgcggccggggtcaccatgcaggacgagcgcgacgagtcggtgccgcgcaccctg
gaggggctcacgatcgtggtcaccggctccctggtcgacttcagtcgcgactccgccaag
gaggcgatcctggcccgcggcggcaaggcggcgggatcggtgtcgaagaagaccgactac
gtcgtggtcggcgacaacgccggctccaaggccgagaaggccgagcagctcggcgtgccg
gtcctcgacgaggacggcttcaaggcgctgctggagcaggggcccgctcaggactcgtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (32)   

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