KEGG   Candidatus Nitrosotalea devanaterra: NDEV_0787
Entry
NDEV_0787         CDS       T04889                                 
Symbol
lig
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ndv  Candidatus Nitrosotalea devanaterra
Pathway
ndv03030  DNA replication
ndv03410  Base excision repair
ndv03420  Nucleotide excision repair
ndv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ndv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NDEV_0787 (lig)
   03410 Base excision repair
    NDEV_0787 (lig)
   03420 Nucleotide excision repair
    NDEV_0787 (lig)
   03430 Mismatch repair
    NDEV_0787 (lig)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ndv03032]
    NDEV_0787 (lig)
   03400 DNA repair and recombination proteins [BR:ndv03400]
    NDEV_0787 (lig)
Enzymes [BR:ndv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NDEV_0787 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     NDEV_0787 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NDEV_0787 (lig)
DNA replication proteins [BR:ndv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NDEV_0787 (lig)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NDEV_0787 (lig)
DNA repair and recombination proteins [BR:ndv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NDEV_0787 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     NDEV_0787 (lig)
   MMR (mismatch excision repair)
    Other MMR factors
     NDEV_0787 (lig)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: CUR51552
UniProt: A0A128A2J3
Position
1:complement(708733..710499)
AA seq 588 aa
MKFSLVADTLSYMENTTKRLELTQHLVDLFKITPPDIIPKVVYLLQGKLRPDHEGVEIGI
AEKIAIKALSKSSGISIRKIEDEYKDTGDFGQVASKILEQKTQTTFLSENITVERVYETL
YKIAELKGARSQDMKMKYISSLLNDATPTEGGFIAKIITSNLRLGIADYTILDALSIAYT
GSKENRPALEHAYNVCSDLGKVSFAVSKNGLDALRDFQVTIFSPIRPMLAERVKSPQEAH
EKMGLEFASEYKLDGERVQVHRQGEKIVLYSRSLENITSYYPDIVENIGKALKSDEIILE
AEAVAINDDTGEFLPFQELMHRRRKYKIAQAVQEYPITVNFFDVLLVDKKSCLDLSYAER
RKLLEKNVTEDTFAKVMPMVLVKSDSEVEDSLENAINSGCEGIMLKQLDSPYRAGARANN
WLKLKREYRNELGDSLDLVVVGAFYGRGRRTGRYGALLLSAYDTEADMFPSICKVGTGFT
DESLDQFYQILADKITVKKDPRIQSGLEADVWFDPEVVIEIVASEITLSPIHKVAMDKIR
KGSGLALRFPKFTGKIRFEKTSENATNIEEILTLYNSQKRVVQDEKIN
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgaaattttcccttgttgcagatacgctaagttacatggaaaataccacaaagagatta
gagcttacacaacatctagtagatctttttaaaattacaccgccggatataataccaaaa
gttgtctacttgctccaaggaaaactacgacctgaccacgagggagtagaaattggcatt
gcagaaaagattgcaataaaagcactatcaaaatcatctggaatttcaattagaaaaatt
gaggacgagtacaaagataccggagactttgggcaagtggcatcaaagatactagagcaa
aaaacccagacaacttttttgagtgaaaacattacagtcgagcgagtctatgagacacta
tacaaaattgcagaattaaaaggcgcaaggtcacaagacatgaagatgaagtacatctca
agcctgctaaatgatgccacgccaacagagggtggatttattgcaaaaataataacatca
aatcttaggcttggaattgcagactatacaatacttgatgcgctatccattgcatatact
ggttccaaagaaaacagaccagcacttgagcacgcgtataatgtctgcagtgacttgggc
aaagtttcatttgcagtatcaaaaaatggactagacgccctaagagattttcaagttacc
atattcagcccgattcgaccaatgcttgctgaaagggtaaagagtccgcaagaggcccat
gaaaaaatgggactagagtttgcatcagagtacaagcttgacggcgagcgagtccaggtc
cacagacagggagaaaaaattgttttgtattctcgcagccttgaaaacataacaagctac
tatccagatattgtagaaaacatcggcaaggcgttaaagtctgatgaaattattttagaa
gcagaagctgttgcaataaacgatgacactggcgagtttttaccattccaggaattgatg
catcgtagacgaaaatacaaaattgcccaagcagtacaagaatatccaatcactgtaaac
ttttttgatgttttactggtggataagaaaagttgccttgacttgtcatatgcagaaaga
agaaaactgttggagaaaaacgtaacagaggatacttttgccaaagtcatgccaatggtt
ctggtaaaatcagacagcgaagttgaagacagtttggaaaatgcaataaattctggatgt
gagggaataatgctaaagcagttagactcgccatatcgtgcaggtgcaagggcaaacaac
tggctcaagctcaagcgagagtatagaaacgagcttggagacagcctcgacttggtggta
gtgggtgcattttatggaagaggtagaaggactgggaggtatggcgctttgttgctgtct
gcatatgacaccgaggcagacatgtttccaagtatttgcaaagtcggtacaggctttaca
gatgagagcctagaccagttttatcaaattcttgcagataagataactgtcaaaaaagac
cccagaatccagagtggacttgaggcagatgtgtggtttgatccagaagttgtaatagag
atagtggcatcagagataaccctcagtccaatccacaaagttgccatggacaaaatcaga
aaaggtagtggacttgcattacggtttccaaagtttacaggaaagataagatttgaaaaa
acatcggagaacgcaaccaacattgaagaaatactaactttgtataacagccaaaaacgt
gttgtgcaagacgaaaaaataaactag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (49)   

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