KEGG T06092: E3E11

Oecophyllibacter saccharovorans: E3E11_05100

Entry

E3E11_05100       CDS       T06092

Name

(GenBank) DEAD/DEAH box helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

neh Oecophyllibacter saccharovorans

Pathway

neh03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:neh00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E3E11_05100
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:neh03019]
    E3E11_05100
   03009 Ribosome biogenesis [BR:neh03009]
    E3E11_05100
Enzymes [BR:neh01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     E3E11_05100
Messenger RNA biogenesis [BR:neh03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     E3E11_05100
Ribosome biogenesis [BR:neh03009]
Prokaryotic type
  rRNA helicases
   E3E11_05100

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII AAA_22 AAA_19 PARM

Other DBs

NCBI-ProteinID:

QDH15328

Position

1173782..1175758

AA seq 658 aa
MPFPDTHPALTRALQAKGYENPTPVQAAVLKPDLEKKDLLVSAQTGSGKTVAFGLAAAPT
LLGDKDRLGAPAAPEVLVIAPTRELAGQVRNELQWLYAETGAVIALCIGGTDARREARML
ERGAHIVAGTPGRLCDHLDRKQLDLSKVRVVILDEADEMLDMGFREELEKLLDAAPADRR
TLLFSATIAREIAALARKFQKDAERIDVSSGQKQHSDISYRAVVTPPHEMVPSLVNVLRY
YNAPTAMVFCNTRQMVGEVQKALQERGFASVAISGEMGQNERTRAIESLRSGLAHVCVAT
DVAARGIDVPALGLVIHASVPTSVEALLHRSGRTGRAGRKGTCVLMVPFNQRRRAERLLA
QARIKAEWEPVPTAAQIYAQDARHLLDSPLLSQPAAQSTAPATEEAVSAPAAPVASEGAA
VEHQPADMTAENAPSEQTADHAPAAETETPVPAEGEAAEHHSTETSEPGTVENTLAPTEA
PEDIAEPDELVRELTDHYTAAQLANALVRLYRERLPQVEDVRPVAADAQRGAPADYSTMK
GAWYRIDVGREGKADPKWLIPLICRIGGIQKRDIGSIRIFPTYSLFQVAEDKVARFDSCR
AGADADEPKISPASAPKGGFAPRAGRKPFPPRSPKREPAPRRAPGGLRTGEKSSRRRS

NT seq 1977 nt +upstreamnt +downstreamnt
atgccttttcccgatactcatccagccctgacccgtgcccttcaggccaaggggtatgaa
aatcccacccctgtccaggctgctgtcctcaagccggacctcgagaagaaagacctcctg
gtctcggctcagaccgggtcgggaaagaccgtggctttcggtctggctgctgccccgacc
ctgctgggcgacaaggaccgcctcggcgcgccggcagcccctgaagtgctggtcatcgcg
ccgacgcgtgagctggcgggccaggtgcgcaacgagctgcagtggctgtatgcggaaacc
ggtgcagtgatcgccctgtgcattggcggcacggatgcccgtcgcgaggcgcgaatgctg
gagcgcggcgcgcatatcgtggccggaacgcccggccggctttgcgaccatctcgaccgc
aagcagcttgatctctccaaagtgcgcgtggtcattctcgacgaagccgatgaaatgctc
gacatgggcttccgcgaagagctggagaagctgctcgacgccgcgcctgccgaccgccgc
accctgctgttctcggccaccatcgcgcgtgaaattgcggccttggcccgcaagttccag
aaagacgccgagcgtattgacgtctccagcggccagaagcagcactccgacatttcctat
cgcgccgtcgtaacgccgcctcatgagatggtgccttcgctggtcaacgtgctgcgttac
tacaatgcgcccacggccatggttttttgcaacacgcgccaaatggtcggtgaagtgcag
aaggccctgcaggaacgcggtttcgcttcggtggcgatttccggcgagatgggacagaac
gagcggacgcgcgccatcgagagcctgcgttcaggcctggcccatgtctgcgtggcgacc
gacgtggccgctcgcggcattgacgtgccggccctggggctggtcatccacgccagcgtt
ccgacctctgtcgaagccctgctgcaccgctcgggccgcacggggcgtgcaggccgcaag
ggcacctgcgtgctcatggtgcctttcaatcagcgccgccgcgccgaacgcctgctggcc
caggcccgcatcaaggcggaatgggagccggtgcccactgctgcccagatctacgcgcag
gatgcccgccacctgctcgacagcccgctgctttcccaaccggctgcacagagcaccgcg
cctgccacggaggaagccgtctctgctccggccgcaccagtggcttctgaaggggcggct
gttgagcaccagcctgcggacatgacggctgaaaatgccccttccgaacagactgctgac
catgcccctgcagccgaaactgaaacccctgtcccggcagagggggaagctgctgagcat
cacagcacggaaacgtctgaacccggcacggtggaaaacacgctggcacccaccgaggcg
cctgaggatattgccgagcctgatgagctggtgcgtgagctgacggatcattacacagct
gcccagcttgccaatgcgctggtgcgcctgtaccgcgagcgcctgccgcaggtggaagat
gtccggcctgtcgccgctgatgcccagcggggtgcgcctgccgattacagcacgatgaag
ggcgcctggtaccgcatcgatgtggggcgtgagggaaaggctgatccgaaatggctcatc
ccgctcatctgccgcatcggggggatccagaagcgcgatatcggcagcatccgcattttc
cccacctattccctgtttcaggtcgctgaagacaaggtggcgcgctttgattcctgccgc
gccggggcagatgctgatgagcccaagatctcacccgcttccgcgccgaaaggggggttc
gctccccgtgccggccgcaagcctttccccccccgctctcccaagcgcgagcctgcgccc
cgtcgtgcgccgggtggtttgagaacaggcgagaaatccagccgtcgccgcagctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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