KEGG   Neorhizobium sp. SOG26: CYG48_05235
Entry
CYG48_05235       CDS       T05626                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
neo  Neorhizobium sp. SOG26
Pathway
neo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:neo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CYG48_05235 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:neo03021]
    CYG48_05235 (rpoB)
   03400 DNA repair and recombination proteins [BR:neo03400]
    CYG48_05235 (rpoB)
Enzymes [BR:neo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CYG48_05235 (rpoB)
Transcription machinery [BR:neo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CYG48_05235 (rpoB)
DNA repair and recombination proteins [BR:neo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CYG48_05235 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DOCK-C2 Trp_halogenase
Other DBs
NCBI-ProteinID: AXV15155
UniProt: A0A346YL08
Position
1043396..1047532
AA seq 1378 aa
MAQTLSFNGRRRVRKFFGKIPEVTEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK
SVFPITDFSGASMLEFVSYEFEPPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVSSLLMALGMDGEEILSTFYTKSIYQR
DGDGWRIPFQAETLKGAKTLSDMIDADTGEVVVEAGKKLTPRLLRQLTEKGLKALKATDD
ELYGNYLAEDIVNMETGEIYLEAGDEIDEKTLPIILKAGFDEIPVLGIDHINVGAYIRNT
LAADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDPERYDLSAVGRVKMNMRLD
LQVEDTVRVLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVDGKVTNDVLYLSAMEEAKYYVAQANAPLEADGSFSEEFVVCRHAGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPVVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDASKSGVDIYRLQKFQRSNQNTCVNQRPLV
AVGDVLNKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVADDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLLDMLRGQVSVAGPKGFKKGVELSNAVVSEYPRSQWW
MFAVEDEKVQGEIEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA
WACAGMGKKIGELLEEYRKTQDITDLKRELTEVYASQARDEVSTFDDESLVRLAEQSKRG
VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEAFDRKVTVGYMYMIKLNHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKLEAAEAGQLPDAAE
NT seq 4137 nt   +upstreamnt  +downstreamnt
atggctcagaccctttcgtttaatggtcgtaggcgcgtacgcaagttttttggaaaaatc
cccgaagtcacggagatgccgaacctaatcgaggttcagaaggcgtcttatgaccagttc
ttgatggttgacgaaccgaagggcggccgccctgatgaaggtctgaatgccgtcttcaag
tccgtattcccgatcaccgatttctccggcgcttccatgctggaattcgtgtcctacgaa
ttcgagccgccgaagttcgacgtcgaggaatgccgtcagcgcgacctgacctatgctgcg
ccgctcaaggtgacgctgcgcctgatcgtgttcgatatcgatgaggataccggcgcgaag
tccatcaaggacatcaaggaacagtccgtctacatgggcgacatgccgctcatgaccgac
aacggtacgttcatcgtgaacggcaccgagcgcgttatcgtgtcccagatgcaccgttcg
ccaggtgtgttcttcgaccacgacaagggcaagagccattcgtccgggaagctgctgttc
gccgctcgcgtcattccgtatcgtggttcgtggctcgatatcgaattcgacgcgaaggac
atcgtgttcgcccgtatcgaccgtcgccgcaagatccccgtgagctcgctgctcatggcg
ctcggcatggacggtgaagaaatcctgtcgaccttctacacgaagtcgatctaccagcgt
gacggcgacggctggcgcatccccttccaggccgaaaccctgaagggcgccaagacgctg
tccgacatgatcgacgccgacaccggcgaagtcgttgtcgaagccggcaagaagctgacc
ccgcgtctcctgcgtcagttgaccgaaaagggcctgaaggctctcaaggccaccgatgac
gagctctacggcaactaccttgccgaagacatcgtcaacatggaaaccggtgagatctac
ctggaagcaggcgacgagatcgacgagaagaccctgccgatcatcctgaaggctggcttc
gacgagattccggttctcggcatcgaccacatcaatgtcggcgcctacatccgcaacacg
cttgccgctgacaagaacgagaaccgccaggacgctctgttcgacatctaccgtgtcatg
cgtccgggtgaaccgccgaccatggaatcggctgaagcgatgttcaactcgctgttcttc
gatccggagcgttacgacctctccgccgttggccgcgtcaagatgaacatgcgcctcgac
ctgcaggttgaagacaccgttcgcgttcttcgcaaggaagacatcctggccgtggtcaag
atgcttgtcgaactgcgcgacggcaagggcgagatcgacgacatcgacaacctcggcaac
cgtcgtgttcgctcggttggtgaattgatggagaaccagtatcgcctgggtctgctgcgc
atggagcgcgccatcaaggaacgcatgtcgtccatcgagatcgacaccgtgatgccgcag
gacctgatcaacgcgaagccggctgctgccgccgttcgcgagttcttcggttcctcgcag
ctgtcgcagttcatggaccaggtgaacccgctttcggaaatcacccacaagcgccgtctt
tcggctcttggaccgggtggtctgacccgcgagcgcgcaggcttcgaagtccgcgacgtt
cacccgacccactacggccgtatctgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgcttgcaaccttcgcccgcgtcaacaagtacggcttcattgaaagcccg
taccgcaagatcgtcgacggcaaggtcaccaacgacgtgctttacctctccgccatggaa
gaagccaagtactacgttgcgcaggcaaacgcgccgcttgaggccgacggttcgttctcg
gaagagttcgtggtttgccgccacgccggcgaagtgatgctcgctccgcgcgacaacatc
aacctgatggacgtctcgccgaagcagctcgtttcggttgcagcggctctcatcccgttc
ctggaaaacgacgacgccaaccgcgccctcatgggctccaacatgcagcgtcaggccgtt
ccgctggttcgtgccgaagcgccgttcgttggtaccggtatggagccggtcgtggctcgc
gactccggtgctgccattgctgcccgtcgtggcggcgtggtcgaccaggtcgatgcaacc
cgtatcgtcatccgcgcaacggaagacctcgatgcttcgaagtctggcgtcgacatctat
cgcctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgtccgctggtc
gccgtcggtgacgttctgaataagggcgacatcattgcggacggtccgtcgaccgacctc
ggtgacctggctctcggccgcaacgcgctcgtcgcgttcatgccgtggaacggctacaac
tacgaagactcgatcctgatgtcggaacgtatcgttgcggacgacgtgttcacctccatc
cacatcgaagaattcgaagtgatggcgcgtgacaccaagcttggtccggaagaaatcacg
cgcgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggcatcgtg
tacatcggcgccgaagtccagccgggcgacatcctcgtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcatcc
gacgttcgcgacacgtccatgcgcatgcctccgggcacgttcggtaccgtcgtcgaagtt
cgcgtattcaaccgtcacggcgtcgaaaaggacgagcgtgcgatggccatcgagcgcgag
gaaatcgaacgcctcgccaaggaccgcgacgacgaacaggcgatcctcgaccgtaacgtc
tacggccgtctgctcgacatgcttcgcggccaggtctcggttgcaggtccgaagggcttc
aagaagggcgtcgagctgtccaacgccgtcgtctccgaatatccccgctcgcagtggtgg
atgtttgccgtcgaggacgaaaaggtccagggcgagatcgaagctctgcgtggccagtac
gacgaatccaagtcgcgccttgaacagcgcttcatggacaaggtcgagaaggtccagcgc
ggtgacgaaatgcctccgggcgtcatgaagatggtcaaggtctttgtcgctgtgaagcgc
aagatccagccaggcgacaagatggccggccgtcacggcaacaagggtgttgtatcgcgt
atcgttccgatcgaggacatgccgttcctcgaggatggcacgcatgtcgacatctgcttg
aacccgctcggcgttccgtcgcgcatgaacgttggtcagattcttgaaacccatcttgca
tgggcatgcgcaggcatgggcaagaagatcggcgaattgctcgaggaataccgcaagacg
caggacatcaccgacctgaagcgcgagctgacggaagtgtatgccagccaggcccgcgac
gaagtttcgacttttgacgacgagtccctggttcgtcttgccgaacagtccaagcgcggc
gtgtcgattgcgacgccggtcttcgacggtgcacatgagccggacgttgcagccatgctg
aagaaggcgggtctgcatgagtcgggtcagtcggtcctctacgacggacggactggcgaa
gccttcgaccgcaaggtcacggttggctacatgtacatgatcaagctgaaccacctcgtg
gacgacaagatccacgcgcgttcgatcggtccgtactcgcttgttacccagcagccgctg
ggcggtaaggcgcagttcggtggccagcgcttcggcgaaatggaggtctgggctctggaa
gcctatggtgccgcctacacgctgcaggaaatgctgaccgtgaagtcggacgacgtggct
ggtcgtacaaaggtctacgaagcgatcgtccgtggcgacgacaccttcgaagcgggcatt
ccggagagcttcaacgttctcgtcaaggaaatgcgctcgctgggcctgtcggtggagctc
gagaactcgaagctcgaagcggcggaagccggccagctgccagacgcagcggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system