KEGG   Nitrosomonas europaea: NE1857
Entry
NE1857            CDS       T00130                                 
Symbol
ygcA
Name
(GenBank) SAM (and some other nucleotide) binding motif
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
neu  Nitrosomonas europaea
Brite
KEGG Orthology (KO) [BR:neu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:neu03009]
    NE1857 (ygcA)
Enzymes [BR:neu01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     NE1857 (ygcA)
Ribosome biogenesis [BR:neu03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    NE1857 (ygcA)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Cons_hypoth95 Methyltransf_23 Methyltransf_25 DNA_methylase Methyltransf_11
Other DBs
NCBI-ProteinID: CAD85768
UniProt: Q82TM7
Position
2006677..2007858
AA seq 393 aa
MSFQGEITHLSQKGLGVVQHPENGLSYFVAGTWPGDRGEFEITDRALNNRKYGYARLIRL
IQSSRHRKTPECRFLGFSGNDCSGCPWMIADYDSQLEQKKNRFLYAMHRVGFDLADLNIG
AVQPSPDLFGYRNRFQVKTDGEKLGFVAEGSHHIVPIEDCLILNPACRQHLQTLRKHLPS
REWSPAPGDDWNFIDLDDQSPAEPVLLNWKQPFRQGNDAQNQWMRSWLKYALEQHGHSHK
IVELFCGSGNFTEVIAQTGCPEILAYEADPQAITVLRQKNLPGVDARTADLYHPFIWKIL
KKNVQDAGILVLDPPRSGLKTLRGFFDAFAALETICYISCDPVTFARDAWIFCKNGWKFT
DIQLIDLFPHTPHIEITATFHKQWGNTKKGNKR
NT seq 1182 nt   +upstreamnt  +downstreamnt
atgtcattccagggcgaaatcacccatctatcccagaaagggctgggagtcgtacaacac
ccggagaacgggctctcttacttcgttgccggcacctggcctggagataggggggaattc
gaaataaccgatcgcgccctgaacaacagaaaatacggttatgcccgtctgattcgcctc
attcagtcttcccgtcatcgtaaaacacctgaatgccggtttctcggtttcagcggcaat
gattgctccggctgcccgtggatgatcgcggattacgacagccagctggaacagaaaaaa
aaccggtttctctacgccatgcacagagttggcttcgatctcgctgatctgaacatcgga
gcggtacagccttctccggatctgttcggctatcgcaaccgttttcaggtcaaaacagat
ggtgaaaaactgggcttcgtggccgagggatcgcatcatatcgtcccgatcgaggactgt
ctgattctcaatcctgcctgccggcaacatctgcaaaccctgcgcaagcacctgcccagc
cgcgaatggagtccggcaccgggcgatgactggaatttcatcgatctggacgatcaatca
ccggcagaaccggtactgctcaactggaaacagcctttccgacaaggcaatgatgcacag
aatcaatggatgagatcgtggctgaaatacgcactcgaacagcacggtcactcgcacaaa
atcgtcgaattattctgcggttcaggcaatttcactgaagtaatcgcgcaaaccggatgc
ccagagatactggcttatgaagccgatccgcaggcaatcaccgttctccggcaaaagaat
ctgcccggtgtggatgccagaacggccgacctctaccaccccttcatctggaagattctc
aaaaagaatgtgcaggatgccggcatcctggtgctcgacccgccccgctccgggctgaaa
accctgcgtggattcttcgatgccttcgctgcacttgaaaccatctgctacatctcctgc
gatcccgtaaccttcgcgcgcgatgcctggatattctgcaaaaacgggtggaaattcact
gatattcagctcatagatctgtttcctcacactccgcatatcgagatcacggccacgttt
cacaaacaatggggaaataccaaaaaaggaaacaaacggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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