KEGG   Nitrosomonas europaea: NE2045
Entry
NE2045            CDS       T00130                                 
Symbol
rpoC
Name
(GenBank) RNA polymerase, alpha subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
neu  Nitrosomonas europaea
Pathway
neu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:neu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NE2045 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:neu03021]
    NE2045 (rpoC)
   03400 DNA repair and recombination proteins [BR:neu03400]
    NE2045 (rpoC)
Enzymes [BR:neu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NE2045 (rpoC)
Transcription machinery [BR:neu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NE2045 (rpoC)
DNA repair and recombination proteins [BR:neu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NE2045 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: CAD85956
UniProt: Q82T76
Position
complement(2215733..2219947)
AA seq 1404 aa
MKALLDLFKQVTQKEEFDSIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSRIRRERMGHIELASPVAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLNRGQLLTEDDYLNKTEEFGDDFSAVM
GAEGIRTLLSNMDIPLEIESLRLEIQTTGSETKIKKAAKRLKVLEAFNKSGMKPEWMILT
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIIRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFNKLETMGVASTIKAAKREVENESPIVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEC
RTLMLSTNNVLSPANGDPIIVPSQDIVLGLYYMTRKKIGAQGEGMVFSDISEVVRAYENK
VVELNAGIIVRIKERKKSRSHGEEPVEAITRYETTVGRALISEILPAGLPFSIINKVLKK
KEISKLINASFRLCGLRETVIFADKLMYSGFSYATRGGISICLDDLVTPSQKNDIIHAAE
QEVHEIANQYISGLVTQGERYNKVVDIWGRAGDQVAKAMMDQLSVEPVTDRETGQVRADK
NGQVVTQESFNSIYMMADSGARGSAAQIRQLSGMRGLMAKPDGSIIETPITANFREGLNI
LQYFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITEDDCDTDGGVIMKALVEGG
DVIESLRERILGRVAATDIVNPETGAVIYAAGMLLDEDAVDEIETCGIDEVKVRTPLTCE
TRYGLCAKCYGRDLGRGMLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTVVANQ
VESKSNGVIRYSHHIRYVKNAQNELIVISRSGEVYIQDENGRERERHKIPYGATLLVQDG
EVIKAGQILASWEPHKRPIIAEYAGKVRFENVEEGVTVVRQIDEITGLATLVVIDPKRRN
VAQSKGLRPLVKFLDENDNEINIPGSDQPVSITFHVGSIITVRDGQQVNIGEVLARIPQE
TSKTRDITGGLPRVAELFEARVPKDVGFLAEATGTVAFGKDTKGKQRLVITDLDGVAHEY
LIPKDKHVTAHDGQVVNKGEVIVDGPIDPHDILRLQGVEALARYISNEVQDVYRLQGVRI
NDKHIEVIVRQMLRRVQIMNAGDSSFIPGEQVERAEVLTENEKLIAENKMPATYEYVLLG
ITKASLSTDSFISAASFQETTRVLTEASIMGKKDDLRGLKENVIVGRLIPAGTGLSFHNI
RKKQRLSESAAYLDTDLTENEVTE
NT seq 4215 nt   +upstreamnt  +downstreamnt
gtgaaagcactgcttgatttattcaaacaagttacacaaaaagaagaatttgattccata
aaaataggtttggcttctcctgaaaaaattcgttcatggtcatacggggaagtgaaaaag
cctgaaacaatcaattaccggaccttcaaacccgagagagatggtttattttgtgccaaa
atttttggtccggtcaaagattatgaatgtttatgcggtaagtataaacggctcaagcac
cggggcgtgatatgtgagaaatgtggtgtggaggttactttatccagaatcagacgtgag
cggatggggcatattgaattggcttcacccgttgctcatatatggtttttgaaatcattg
ccttcgcgtctaggtctcgttctggatatgacgttacgagatatcgaacgagttctgtat
tttgaagcttatgtcgttaccgatcccggcatgactccgctgaatcgtggtcaacttctg
acagaagacgactacctgaataaaacagaagaatttggggatgatttcagtgctgtgatg
ggcgcagaaggtatccgtaccctgctaagcaacatggatattccattggaaattgaatcc
ttacgtttggaaatccagacgactggttcagaaaccaaaatcaagaaagccgccaagcgg
ctcaaggtgctcgaagcattcaataaatccggtatgaagccggaatggatgatactgacg
gtattgcctgtgcttccgcctgagctgagaccattggttccattggatggaggtcgtttt
gcaacctctgatctcaatgatttgtacaggcgtgttatcaaccgcaataatcgtttgaag
cggttgctggaactgcgggcaccggaaattatcattcgtaacgaaaaacgtatgttgcag
gaatcggtggattcgttgcttgataacggccgccgaggaaaagcaatgaccggggccaat
aagcggcccttgaaatcacttgcagatatgatcaagggtaagggtggtcgttttcgccag
aacctgctgggtaagcgagtagactattccggccgatccgtaatcgtggtgggtccgcaa
ctcaagcttcatcagtgcggtttaccgaaaaaaatggcactggagttattcaaaccattt
attttcaataaattggaaacgatgggggttgcaagtacgatcaaagctgccaagagggaa
gttgagaacgaaagtccaatcgtatgggatatcctggaggaagttatccgtgaacatcct
gtaatgcttaatcgtgcccctaccttacatcgactcggtattcaagcgtttgagcctatc
ctggtcgaaggaaaggcgatccagttacatccgctcgtatgtgctgctttcaatgccgac
tttgacggtgatcagatggctgtacacgttcctttgtcgctcgaagctcagatggaatgc
cgtacgctgatgttatcgaccaataacgtcctttcaccagctaatggtgatccaatcatt
gttccttctcaggatattgtgctgggtctttattacatgacccgcaagaagataggtgct
cagggagagggaatggttttctcggatatttcggaagttgtgcgtgcttacgaaaataag
gttgtggagctgaatgccggaattatcgtcagaatcaaggaaagaaaaaaatctcgttca
catggcgaagagcctgttgaagcaataacacgttatgaaaccaccgttggtcgagcactt
atttctgaaattttgccagcaggacttcctttttccataatcaacaaggtactcaagaaa
aaggaaatttcgaagcttatcaatgcgagtttccgtttatgtggtttacgggaaaccgtt
atatttgctgataagcttatgtactctggtttttcctatgctactcgtggtggtatttcc
atctgtttggatgatcttgttaccccatcgcaaaaaaatgacattatccatgctgctgag
caggaagtgcatgaaattgcaaatcagtatatatccggtctggtgacacaaggagagcgt
tacaacaaggttgtagatatatggggtcgagccggtgatcaggtagctaaggcgatgatg
gatcagctgagtgtcgagccggttacagatcgtgaaaccggacaggtcagagccgataag
aatggtcaggttgttactcaggaatcattcaactcaatttacatgatggcggattcgggt
gctcgaggatctgctgcacaaattcgtcagctttccggtatgcgtggtcttatggcgaag
cccgatggttctatcattgaaacaccgattacagccaatttccgtgaaggcctcaacatt
cttcaatattttatttcgacacatggtgcaaggaagggattggccgatacagcgctcaag
actgcaaattcagggtacctcactcgtcgtctggttgatgtgactcaggatctagttatc
acagaagatgattgtgatacagatggtggcgtaataatgaaggcgctggtggaaggtggt
gatgtcattgagtctttacgagagcgtatattgggtcgtgtggctgcgacagatattgtg
aatccggaaactggtgcagtcatttatgcggcgggtatgttgctggatgaagatgcggtt
gacgagatcgaaacttgtggtatcgatgaagtaaaagtaaggacaccactcacttgtgaa
acccgatatgggttgtgtgcaaaatgctatgggcgcgatctgggtcgaggaatgctcgtc
aatgttggagaggcagtaggagtaatcgctgctcaatcgattggtgagccgggtacacag
ttgaccatgcggaccttccatattggtggtgcggcttcaagaacagttgtggctaatcag
gttgaaagtaaatccaacggggttattcgttactctcatcatattcgttatgtgaaaaat
gcccagaatgagctgatagtcatttcacgcagtggtgaagtttatattcaggatgaaaat
ggtcgtgaacgtgagcggcataaaattccttatggtgcaacattacttgttcaggatggt
gaagtaatcaaggcaggacagattctggcatcatgggaaccacacaaacgtccgatcata
gcggaatatgcgggtaaggtacgttttgagaatgttgaagaaggtgtaacagtcgtcagg
caaatcgatgaaataaccggcctggcaactctggtggttatcgaccccaaacggcgcaat
gttgcgcaatctaagggattacggccacttgtcaaattcctggatgagaatgacaatgaa
atcaatatccctggaagtgaccagcctgtcagtattacattccacgtcggatcgattatt
acggtacgggacggacagcaggtgaacatcggtgaggttctggcgcgtattcctcaagag
acatccaaaactcgtgacattacgggtggtttaccccgtgtggctgaactgtttgaagcc
agagtgccgaaagatgtgggttttctggcagaagccaccggtacagttgctttcgggaag
gataccaaaggaaagcaacgactggtcattactgatctcgacggggttgcgcatgaatat
cttattcccaaggataagcatgtgacagcacatgatggacaagtcgtaaataaaggagaa
gtgatcgttgatgggccgatcgatccccacgatatattgcggttgcaaggtgtcgaggca
ttagcccggtatatcagtaacgaagtacaggatgtttaccgcttacagggggtgcgtatc
aatgataagcatatcgaggtgattgttcgtcagatgctgcgccgagttcagataatgaat
gcgggtgactcaagtttcattccgggcgagcaagtcgagcgggcagaagtacttactgag
aacgagaagctcatcgccgaaaacaagatgcctgccacctatgaatatgtactactaggt
ataaccaaggcatcgctttctacagattcatttatttctgcggcttccttccaggaaaca
acccgggttctgaccgaagcatccatcatgggtaagaaggatgatttacgtggtttgaaa
gaaaatgtgattgtgggtagattaataccggcaggaaccgggctgtcttttcacaatatc
cggaaaaaacagagattatcggagagcgctgcttacctggatactgatttaacggagaat
gaagtgacggaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system