KEGG   Nocardia farcinica IFM 10152: NFA_17640Help
Entry
NFA_17640         CDS       T00207                                 

Gene name
murD
Definition
(GenBank) putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
  KO
K01925  UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
Organism
nfa  Nocardia farcinica IFM 10152
Pathway
nfa00471  D-Glutamine and D-glutamate metabolism
nfa00550  Peptidoglycan biosynthesis
nfa01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:nfa00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00471 D-Glutamine and D-glutamate metabolism
    NFA_17640 (murD)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    NFA_17640 (murD)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:nfa01011]
    NFA_17640 (murD)
Enzymes [BR:nfa01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.9  UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
     NFA_17640 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:nfa01011]
 Precursor biosynthesis
  Amino acid ligase
   NFA_17640 (murD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Mur_ligase_M Mur_ligase_C TrkA_N DUF3995
Motif
Other DBs
NCBI-ProteinID: BAD56610
NIH_Japan: nfa17640
UniProt: Q5YYY1
Position
1919747..1921240
Genome map
AA seq 497 aa AA seqDB search
MIRMVEHSPRALRSPGPMLEFLRGRDVLVAGWGISGRSLVEPLRDIGAHPVVTDSGAKAL
AEAAELGLEVATSVELESADLSRFALVITSPGWRPDSPVLVSAVTEGIPVWGDVEFAWWV
DQARIYGPVRKWLVVTGTNGKTTTTQMTHAILRAAGIASVACGNIGLPILDALRRNPGPQ
VLAVELSSFQLHWAPSVRPEAGVVLNVAEDHLDWHGGLDAYAAAKARALVGRIGVVGLDD
PVAAALARRSKARRTVGFRVGVPADGELGVVDGKLLDRAFTKAAILAEVGDISPPGPAGV
ADALAAAALTRAIDVAPQFVKEGLQEHKVGPHRAAFVREVAGVEFIDDSKATNPHAARSS
ILAHPHVVWIAGGRLKGAAVEDLVEEVADRLVAAVLIGVDAPVIAAALARHAPEVPVVEV
RAGDDAVMADDPLRPDEADAVMAAAVRTAAGYARAGDTVLLAPAAASLDMFADYTHRGRS
FADAVHALEDGDIGRQP
NT seq 1494 nt NT seq  +upstreamnt  +downstreamnt
gtgatcaggatggtcgaacattctccgcgggccctgcgatcaccggggcccatgctcgaa
ttcctgcgcgggcgtgacgtgctcgtcgccggctggggcatctccgggcgctcgctggtc
gagccgttgcgcgacatcggcgcgcatcccgtcgtcaccgacagcggcgcgaaggcgctg
gccgaggccgccgaactcggcctggaggtggccacctcggtcgagctcgagagcgccgac
ctgagccggttcgcgctggtcatcaccagcccgggctggcggccggactcgccggtgttg
gtctcggcggtcaccgagggcatcccggtctggggcgatgtcgagttcgcctggtgggtg
gaccaggcccgcatctacgggccggtgcgcaagtggctggtcgtcaccggcaccaacggc
aagaccaccaccactcagatgacgcacgccatcctgcgcgcggcggggatcgcgagcgtc
gcctgcggcaacatcgggctgccgatcctggacgcgctgcgccgcaaccccggtccgcag
gtgctggcggtggaactgtcgagcttccagctgcactgggctccctcggtacgcccggag
gcgggcgtggtgctcaacgtcgccgaggaccatctggactggcacggcgggctggacgcc
tacgccgcggccaaggccagggcgctggtcgggcggatcggcgtggtcggcctggacgat
ccggtggccgcggcgctggcccggcgctccaaggcccggcgcacggtcggcttccgggtc
ggtgtgcccgccgacggcgagctgggcgtggtggacggcaaactgctcgaccgcgcgttc
accaaggccgcgatcctggccgaggtgggcgacatcagcccgcccgggcccgccggtgtc
gccgacgcgctggccgccgccgcgctgaccagggccatcgacgtcgcgccgcagttcgtc
aaggagggcctgcaggagcacaaggtgggcccgcaccgggcggcgttcgtgcgggaggtg
gccggtgtcgagttcatcgacgactccaaggccaccaacccgcacgcggcccgctcctcg
atcctggcccacccgcacgtggtctggatcgcgggcggccggctcaagggcgcggccgtg
gaggacctggtggaggaggtcgccgaccggctggtcgccgccgtgctgatcggcgtcgac
gcgccggtgatcgcggccgcgttggcgcgacacgcgcccgaggtccccgtggtcgaggtg
cgcgcgggtgacgatgcagtgatggccgacgacccgctccgccccgacgaggccgacgcc
gtgatggcggcggccgtgcgcacggccgccgggtacgcccgcgcgggcgacaccgtgctg
ctcgcgcccgcggccgcctcgctggacatgttcgccgattacacccaccgtggacgcagc
ttcgccgacgcggtgcacgcgctggaagacggtgacatcgggcggcagccgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   NIH_JAPAN (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (29)   

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