KEGG   Nocardia farcinica IFM 10152: NFA_37400
Entry
NFA_37400         CDS       T00207                                 
Symbol
rnd
Name
(GenBank) putative RNase D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
nfa  Nocardia farcinica IFM 10152
Brite
KEGG Orthology (KO) [BR:nfa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:nfa03016]
    NFA_37400 (rnd)
Enzymes [BR:nfa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     NFA_37400 (rnd)
Transfer RNA biogenesis [BR:nfa03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    NFA_37400 (rnd)
SSDB
Motif
Pfam: DNA_pol_A_exo1 DNA_pol_A_exoN HRDC Lipase_GDSL_2
Other DBs
NCBI-ProteinID: BAD58588
NIH_Japan: nfa37400
UniProt: Q5YTA3
Position
3958857..3960131
AA seq 424 aa
MPEAEQPAPGIEDTPSAEPLLAPVDGVPPVLATAAEVAAAAARIAAGTGPLAVDAERASG
FRYSARAYLIQLRRAGAGTFLVDPIPVADALGPLAEAINDLEWVLHSADQDLPGLAELGL
RPARLFDTELGGRLAGFERVGLAAMVERLLGRTLRKGHGAADWSTRPLPAEWLNYAALDV
ELLLELRDAVAAELQRQGKSDWAAQEFEHVRTTEPPAPKADRWRRTSGIHTLRKPRQLAI
VRELWTTRDTLARSRDIAPARILPDGAIVAAAAADPRSIAQLRALPVFGGPRQRRYSREW
LAAVDRARALPDDALPPLTQPFDGPPPPNRWERRDPVAAARLTRARAAMAELSTEHAVPV
ENLLSPDLVRRLCWDGLPDYDRVGDPGDLAAAIDGFLKSGGARPWQRELTVPRLTLALTP
PASA
NT seq 1275 nt   +upstreamnt  +downstreamnt
atgccggaagcagaacagcccgcgccgggcatcgaagatacaccgtcggccgagccgttg
ctcgccccggtcgacggcgtgccaccggtgctcgccaccgccgcggaggtcgccgccgcc
gcggccaggatcgcggcgggcaccggcccgctggccgtcgacgccgaacgcgcctccggc
ttccggtactccgcgcgcgcctacctgatccagctgcgccgcgcgggcgcggggaccttc
ctcgtcgacccgatcccggtcgccgacgcgctgggaccactcgccgaggcgatcaacgac
ctcgaatgggtgctgcactcggccgatcaggatctgcccggcctggccgaactcgggttg
cgcccggcgcggctgttcgacaccgaactgggcggcaggctggccgggttcgagcgggtc
ggcctcgcggcgatggtggagcgactactcgggcgcactctgcgcaaggggcacggcgcg
gcggactggtcgacgcggccgctgcccgcggagtggctcaactacgccgccctggacgtc
gaactgctgctcgaactgcgcgacgcggtggccgccgaactccagcggcagggcaagagc
gactgggccgcacaggaattcgagcacgtgcgcaccaccgaaccgcccgcccccaaggcc
gaccgctggcggcgcacctccggcatccacaccctgcgcaagccccgccagctcgccatc
gtccgcgaactgtggaccacccgcgacaccctggcccgcagccgcgacatcgcccccgcg
cggatcctgcccgacggcgcgatcgtcgccgcggccgccgccgacccgcgcagcatcgcc
cagctgcgcgcgctgccggtgttcggcgggccgcgccagcgccgctactcccgggaatgg
ctggcggcggtggaccgcgcccgcgccctgcccgacgacgcgctgcccccgctgacccag
cccttcgacggtccgccgccgccgaaccgctgggagcgccgggacccggtggccgcggcc
cggctgacccgggcccgcgcggcgatggccgagctgtccaccgagcacgcggtgccggtg
gagaacctgctctcccccgatctggtccgccgcctgtgctgggacgggctgcccgactac
gaccgggtcggcgatccgggcgacctggccgccgccatcgacggcttcctcaaatccggc
ggcgcccgcccctggcagcgcgaactgaccgtgccacggctgacactcgcgctgaccccg
cccgcctcggcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NIH_JAPAN (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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