KEGG T00207: NFA

Nocardia farcinica IFM 10152: NFA_43130

Entry

NFA_43130         CDS       T00207

Name

(GenBank) putative sigma factor

K03088

RNA polymerase sigma-70 factor, ECF subfamily

Organism

nfa Nocardia farcinica IFM 10152

Brite

KEGG Orthology (KO) [BR:nfa00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nfa03021]
    NFA_43130
Transcription machinery [BR:nfa03021]
Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     NFA_43130

SSDB

Motif

Pfam:

DUF6596 Sigma70_r2 Sigma70_r4_2 Sigma70_r4 Sigma70_ECF TPR_14 TPR_2

Other DBs

NCBI-ProteinID:

BAD59162

NIH_Japan:

nfa43130

UniProt:

Q5YRM9

Position

complement(4471197..4472429)

AA seq 410 aa
MAGPAVDAVYRAEFGRALATVARLVGDIAAAEDAVQEAFAEALRTWPARGTPANPGAWIT
TVARNRALDRLRREATRADREVEAARVRPPDEPQEVTPVPDDQLRMIFTCCHPALSSESQ
VALTLRLVCGLRTSEIARAFLQSEHTVAQRLSRAKAKIRRAAIPLRVPPPHLLPERLPGV
LACVYLVFTEGYSATGGPAAVRAELCDEAIRLGRLLCALLPAEPEARALLALMLLHDSRR
GQRRSPDGAAVPLEEQDRGGWNRAAIAEGRALLADLADARGPYLAQARIAAAHASAPDWS
TTDWARVVAGYDELLRYSASPVVRLNRAVALGFLAGFDAGLAAIDEIAGHPRLAATHMVA
ASRADLLRRAGRPREAAEQYRIALDRAGNDETRAFLARRLREVQTALSGG

NT seq 1233 nt +upstreamnt +downstreamnt
gtggcgggcccggcggtcgacgcggtctaccgcgccgagttcgggcgggccctggccacc
gtcgcccggctggtgggcgatatcgccgccgccgaggacgccgtacaggaggccttcgcc
gaggcgttgcgcacctggcccgcccgcggcacacccgccaacccgggcgcctggatcacc
accgtcgcccgcaaccgggcgctggaccggttgcggcgcgaggccacccgcgccgaccgg
gaggtcgaagcggcgcgggtgcgtccgccggacgaaccgcaggaggtgaccccggtgccc
gacgaccagttgcggatgatcttcacctgctgccacccggcgctgtcgagcgaatcccag
gtggccctcaccctgcgcctggtctgcgggctgcgcacgagcgagatcgcgcgcgccttc
ctgcaatcggaacacaccgtggcccaacggctctcccgggccaaggcgaagatccgccgg
gccgccatcccgttgcgcgtgccgccgccacacctgctgcccgagcggctgcccggcgtg
ctggcctgcgtctacctggtcttcaccgagggctactcggccaccggcggcccggcggcg
gtgcgggcggagctctgcgacgaggcgatccggctgggcaggctgttgtgcgccctgctg
cccgccgagccggaagcccgcgccctgctcgcgctcatgctgctgcacgacagcagacgc
gggcagcgccgcagcccggacggcgcggccgtgccgctggaggaacaggaccgcgggggc
tggaaccgcgcggccatcgccgagggccgggcgctgctggccgacctcgccgacgcgcgc
gggccctatctcgcgcaggcgcgcatcgccgccgcgcacgcgagcgccccggactggtcc
acgaccgactgggcgcgggtggtggcgggctacgacgaactgctgcggtactccgcgtcc
ccggtggtgcggctcaaccgcgcggtcgccctcggtttcctggccgggttcgacgccggg
ctggccgcgatcgacgagatcgccgggcatccccggctcgcggccacgcacatggtcgcc
gcgagccgcgccgacctgctgcgccgggccgggcggccacgggaggccgccgagcagtac
cggatcgcgctcgaccgcgcgggcaacgacgagacccgcgcgttcctggcccgccggcta
cgggaggtgcagaccgcgctcagcggcgggtga

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NIH_JAPAN (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

Download RDF

DBGET integrated database retrieval system