KEGG   Nothobranchius furzeri (turquoise killifish): 107382087
Entry
107382087         CDS       T05163                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107382087
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nfu03021]
    107382087
   03036 Chromosome and associated proteins [BR:nfu03036]
    107382087
Transcription machinery [BR:nfu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     107382087
   Coactivators
    SAGA/TFTC/STAGA complex
     107382087
Chromosome and associated proteins [BR:nfu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     107382087
SSDB
Motif
Pfam: TAF4 TAFH TAF
Other DBs
NCBI-GeneID: 107382087
NCBI-ProteinID: XP_015809560
Position
sgr07:complement(62227485..62380004)
AA seq 1074 aa
MAGDSDPLEDMLFSEVDEKAVSDLVGSLESQLSGQSSSAGKADGNGGAGSADPANHHLGK
PPPAPLSTTTLEQQQGQLNKPEMRQEMNSKDASPDKTVTAPSPASATVFGEAPTTSVNVA
SSGSQSHGASVTAVTASGGSTLASPPHDSISTASSRSPKAAPSTGETSVEKNTPRKRTAA
PRRSASARLKSLNGAAITTRRNSNTAVGENVSSPDTTPSNSTRPVTSSINTSTFTLSNAS
LPVGQAAIALDRGTPTIALHRLPSHIVASIAQNGNGTTVSALAQQGARPGATISSASQEE
HSKSTTDTGASNADDCQSKIVMSSQSGSVSSVINSVSSASSAAVTPATTSTAAPTTTTTT
TTTTVSPPLIPASTPATCVAGLATTSACGPSQTISVTTTISMVRPTAPSPTAVAATSAQT
QPRPGLAVPQRIVAPQLIVRPSQQQATIQLPPGFTIPAERGAMRTEVGQLVMVPQQAFAQ
GQAPAQAQNNISLRPAGPTSGVAFRVTTPQQSPATSQTTRQCSLTPAKMAPAPSPTSSSP
ALQTSSSSSSLSSSSCPVLRPKGPVAPAVAVAAPQQTPMVIAPQAPTQSTPQPVQPAPTC
VTAPPGASVISQEMQENVKKCKNFLATLIKLASHNSPFPETSKNVKALVQDLLDAKIEPE
EFTSRLQTELKSSPQPYLVPFLKKSLPALRLSLLNSQQSLTQPLQQGVKPAAGGTPPAAI
VAGPAVRIRHPNSVSTTGALPAGTLGHTAAMGVKTGGTVGGQVRMPMVITQSIRPQGTVG
KGAIIQAGRSPMGLPVQISANQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILA
TNSELVGTQIRSCKDEAFLHPGLLHRRILETAKKFGVTEVSTEAVTFISHATQSRLRTLV
EKVSIIAQHRLDSCKDDECYEQSGDVRSQLRFFEQLERMEKQRKDEQEREILLKAAKSRS
RQEDPEQARLKQKAKEWQLQEQAEIRQRDANLTALAAIGPRKKRKLDSPGTTPTGAEVPS
SAAGSPAGSSSLTSSSRQYARQRITRVNLRDLIFYMEQERETAHSLLLYRALLK
NT seq 3225 nt   +upstreamnt  +downstreamnt
atggcgggcgactcagaccccctggaagatatgctcttttcagaggtggatgaaaaagct
gtcagcgacctcgtgggctcgttagagtcacagcttagtggacaaagcagctcagcaggt
aaagctgacggtaacggaggcgctggctctgcggacccggctaaccatcacttaggaaaa
ccgccaccagctccactgagcacaacaacactagaacaacaacaaggacagcttaataaa
cctgagatgcgccaggaaatgaactccaaagacgctagtccggataaaactgtcacagct
ccttcaccggcctctgctactgtttttggagaggctcccaccacttcagtgaacgttgct
agcagcggttctcaatcacatggagcatccgtcacagcagtgaccgcgtctggtgggtca
actttggcatcaccgccacacgacagcatcagcaccgcatccagccgcagcccgaaggct
gccccgagcacaggtgagacgtctgtggagaaaaacacgccgaggaaacgcacagcggca
ccgaggaggagcgcttcggctcggctaaagagtttgaacggcgcagctataacgacgagg
cggaatagcaacacggcggtgggcgagaacgtcagctcgccggatacaactccatcaaac
tccaccagaccggtcacatcctccatcaacacatcgactttcacgctgtccaacgcaagc
ctccctgtgggtcaggctgccattgctctggaccgggggacgcccaccatcgctttacac
agactccccagtcacatagtagccagtatagcccagaacggcaacgggaccacggtctcg
gccctggcccagcagggggctcgtccgggagccaccatctcctctgcttcccaggaggag
cacagcaaatccaccacggatactggggcttccaacgcagacgactgtcagtccaaaatt
gtaatgtccagccagtccggtagtgttagctcggtgataaactctgtgtcctcggcttcc
tctgctgctgtcacaccagcaacaacctcaacagcagctccaaccaccaccactactacc
accaccaccaccgtgagcccgcctctgatccctgcctcaacacctgccacatgtgtggct
ggtttggcaaccacgtcagcatgtggaccatctcagaccatatctgtcaccaccaccatc
agcatggtcagacccacagccccctctcccacagctgttgcagccacctctgcacagact
caaccccgtcctggacttgcagtgcctcaaaggattgtagccccccagctgattgtcaga
ccttcccagcagcaggctaccattcagctgccccctggctttaccatcccagctgagaga
ggagcgatgcgaaccgaggtgggacaactggtcatggttcctcagcaggcttttgcccaa
ggtcaagctccagctcaggctcagaacaacatctcactgcgacctgcaggccctaccagc
ggggtggccttcagagtgacgactccacagcagtctcctgcgacctctcagaccaccagg
cagtgttctttgaccccagccaagatggcgccggctccctctcccacttcttccagccct
gctctccagacctcttcatcatcttcatctttatcctcttcttcctgtcctgtactccgc
cctaaaggccctgtggcaccggccgtggcagtggcggctccgcagcagacccctatggtt
atagccccccaggcccccacccagtccaccccccagccggtgcagccggcaccgacgtgc
gtcacggcacccccaggagcttcggtcatatcccaggaaatgcaagaaaatgtgaagaaa
tgcaagaacttcctcgccacgctcatcaaactggcgtcacacaactctccttttcctgag
acttccaagaacgttaaagctctggtccaagacctgctggatgccaagatcgaacctgag
gagttcaccagccggctgcagactgagctcaagtcgtctccgcagccttacctggtgccg
tttctcaagaaaagcctcccggccctcaggctgtctctgctgaatagtcagcagtccctg
acccagcccctgcagcaaggagtcaaaccagcggccggtggcacccctcctgctgccatc
gtggctgggccggctgtccgcatacggcaccctaacagcgtcagcaccaccggtgcgctg
cctgctgggacgctcggacacacagctgctatgggggtgaagactggagggactgttggt
ggacaagtccggatgcccatggtgatcactcagtccatcagaccacaaggcacagtgggg
aagggagccatcattcaagcaggcagaagtccaatgggcctgcctgttcagatctctgcc
aatcagaaaaacaagctgaacgaccccggaggaggctctttcagagacgatgatgacatc
aacgatgtggcgtccatggccggggtgaatctgaacgaggagagtgcgagaatactggcg
accaactctgagctggtgggaacgcagatccgctcctgtaaagacgaggccttcctccac
ccgggactgctgcaccgacggatcctggaaaccgctaaaaagtttggagtgacagaagtt
tccacagaagcagtgacattcatctcacatgcaacacagtcacgactccggactcttgtg
gagaaagtttctatcatcgcccagcatcgactcgactcttgtaaggacgacgagtgctac
gagcagtcgggagacgttcgctcgcagcttcgcttcttcgagcagctggagaggatggag
aagcagaggaaggacgagcaggagagggagatccttctgaaagctgctaaaagtcgctcc
aggcaagaggacccagagcaagctcggctgaaacagaaagctaaggagtggcagcttcaa
gaacaggctgagattagacagcgagacgccaacctcacggcgctggctgccatcggacca
cgaaagaaacgtaaactggactcaccggggaccacgccgacaggggccgaggttcccagc
agcgcagcgggttctccggctggctcctcctccctcacctcctcttcccgtcagtacgca
cggcagcgcatcactcgtgtcaacctcagggacctcatattctacatggagcaggagaga
gagaccgcccactcgctcctcctctaccgagccctgctcaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (65)   

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