KEGG   Nothobranchius furzeri (turquoise killifish): 107386082
Entry
107386082         CDS       T05163                                 
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03082  ATP-dependent chromatin remodeling
nfu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107386082 (smarcb1)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    107386082 (smarcb1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:nfu01009]
    107386082 (smarcb1)
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nfu03021]
    107386082 (smarcb1)
   03036 Chromosome and associated proteins [BR:nfu03036]
    107386082 (smarcb1)
Protein phosphatases and associated proteins [BR:nfu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     107386082 (smarcb1)
Transcription machinery [BR:nfu03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     107386082 (smarcb1)
    SWI/SNF complex
     107386082 (smarcb1)
Chromosome and associated proteins [BR:nfu03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    107386082 (smarcb1)
   PBAF complex
    107386082 (smarcb1)
   SWI/SNF complex
    107386082 (smarcb1)
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 107386082
NCBI-ProteinID: XP_015815749
UniProt: A0A1A8VDP1
Position
sgr11:complement(6717113..6724008)
AA seq 373 aa
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLATVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGREKKRTFPLCFDDHDPAVIHENATQPEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEDQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggcgctgagcaaaacgtttggacaaaaaccggtgaaatttcagctcgaggaggatggg
gacttttacatgatcggttcagaggttggaaactaccttcgtatgtttagaggctccttg
tataaacgctacccatcgttatggagaaaactggcaacagtggaagagcgaaagaaaata
gtggagtcgtcacacgatcacggctacactcagctggccaccagcgtgacgctgctgaag
gcctcagaggtcgaagagattctggatggaaatgatgaaaagtacaaagctgtgtcgatc
agcactgagccccccgcctacctcagggaacagaaagccaagaggaatagtcagtgggtt
ccaacgctacctaacagttcccaccacctggatgcagtcccctgctccaccaccatcaac
cgcagccggctgggccgggaaaagaagaggaccttccctctgtgctttgatgaccacgat
ccagctgtgatccatgaaaatgccacccagcccgaagtccttgtcccgatccgcctggac
atggagatcgagggtcagaagctccgagatgctttcacttggaacatgaacgagaaactc
atgacgccagagatgtttgcggagatcttgtgtgacgacctggacctgaacccactggcg
ttcgttcctgccatcgcctcggccatccgacagcagatcgagtcatacccgacagacagc
atcctggaggaccaaacggaccagagggtgatcatcaagctgaacatccacgtggggaac
atctctctggtggaccagtttgagtgggacatgtcggagagggaaaactcgccggagaag
tttgctctgaagctgtgctcggagctcggcctgggcggagaatttgtcaccaccatcgcc
tacagcatccgaggtcagctgagctggcaccagaggacctacgccttcagtgagaacccg
ctgcccactgtggagattgccatcagaaacacaggtgatgctgaccagtggtgtcctctg
ctggagaccctgacagacgcagagatggagaagaagatcagagaccaggacagaaacacc
aggcgaatgaggcgtctggcgaacacggcaccagcgtggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (30)   

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