KEGG   Nothobranchius furzeri (turquoise killifish): 107390237
Entry
107390237         CDS       T05163                                 
Name
(RefSeq) collagen alpha-2(V) chain-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    107390237
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:nfu00536]
    107390237
Glycosaminoglycan binding proteins [BR:nfu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   107390237
SSDB
Motif
Pfam: Collagen COLFI VWC TILa
Other DBs
NCBI-GeneID: 107390237
NCBI-ProteinID: XP_015822325
UniProt: A0A1A8AS29
Position
sgr14:complement(41353872..41401478)
AA seq 1491 aa
MMISMHLRTFIFLVVSRLVIVTCQDGSSGDDDCTADGQKYSNTDIWKPEPCRICVCDKGQ
VLCDEVHCEEHTNCEKMYVPEGECCPVCQGDSPSGGGGGGGGDRVYKGQKGEPGEVPIVT
GIRGRPGPMGPPGSAGYRGPHGHKGRPGLRGPPGYDGEPGIPGQPGEPGPPGPPTHPGGL
GGQMAQGFDSKTGPQAMLNGARGEAGARGPPGPSGSPGQAGPQGPHGDVGDPGHMGSPGQ
RGPEGPAGKPGKDGEPGKSGNPGEVGFPGSAGPRGFPGTPGPPGLKGHRGHSGPLGQKGE
MGAVGSKGATGPPGPMGGPGPMGPAGMPGERGRPGPGGIAGKRGLPGNIGKPGPLGPLGI
NGPPGYPGTPGMKGQPGPTGVRGPEGPQGQRGETGHQGRVGPVGLRGPMGTDGGPGAKGP
VGNLGPQGQGGHPGPSGPPGPQGSTGQPGIKGQGGDVGVAGFKGEAGPKGEPGPPGSQGV
IGPQGEEGKRGPRGDPGSVGPPGPIGERGSPGNRGFPGADGLPGPKGAQGDRGISGPAGP
KGSLGDLGRSGEPGLPGARGLTGTPGVQGAEGKPGPLGAPGEDGRPGQAGPIGNRGPAGT
MGVPGPKGFNGDPGKTGEQGSAGVPGQRGPPGKDGEVGPAGPPGPPGPAGDRGEQGPPGV
NGFQGLPGNQGPPGEPGKPGDQGIPGEIGPVGQIGPRGERGIPGERGDLGPTGLQGPKGI
PGAPGPDGPKGSPGPTGALGDVGPPGLQGMPGERGISGPPGPKGDRGAVGEKGSEGTPGN
DGARGAPGLVGPLGPAGPSGEKGEPGPKGPAGPPGSRGTHGARGDPGPIGAVGFSGPPGP
DGQPGVKGEPGEPGQKGDAGSPGPQGLAGAHGPPGPVGVSGLKGGRGTQGAPGPTGFPGS
AGKVGPPGPPGPLGEAGPQGPPGKEGPAGLRGDHGPPGRQGELGPPGPPGSPGDKGDPGE
DGPTGPDGPPGPAGTTGQRGIVGLPGQRGERGMPGLPGPAGPPGKQGAAGQTGDKGPPGP
VGVPGANGPRGDPGPDGSAGSDGPPGKDGNLGLRGDRGDSGPEGLIGPQGLPGPPGPVGA
PGEQGRRGEPGSRGPQGPPGSAGKRGLVGPQGPRGDKGDLGDHGERGQKGHRGFTGLQGL
PGPPGTTGEQGAPGIVGPSGQRGPPGPIGPPGKEGYLGQPGPMGPPGTRGLSGEIGPQGP
PGEDGPPGPPGPPGPPVAAVDDLFGPHDYDSGPPPPPEFSEDEALPNSNASAIIVPVDPS
VQATLKALSSQIDSMKSPDGSRKHPARTCDDLKRCYPLKKSGEYWVDPNQGSAEDAIKVH
CNMDTGETCISANPSTIPRKVWWTASRSKPVWFGADINSGTHFTYGNKDQPVNSVTVQMT
FIRLLSKEASQTITYHCKNSVGYEDARTGNLKKAVILKGSNDLELKAEGNNRFRYTMVED
SCSKASSNWGKTVLEYRTQKTARLPIVDIAPVDIGGPNQEFGIDIGPVCFL
NT seq 4476 nt   +upstreamnt  +downstreamnt
atgatgatttccatgcatttgaggacttttatctttctggtggtctctcggcttgtgatt
gtgacatgtcaggacgggagcagtggagacgacgattgcacagcagatggtcagaagtac
tcaaacaccgacatctggaagccggaaccctgccggatctgcgtttgtgacaaaggccag
gtcctctgcgatgaggtccattgtgaagagcataccaactgtgagaagatgtacgtccca
gagggcgagtgctgccctgtctgtcagggcgattcgcccagcggcggcggtggtggtggc
ggtggagatagagtctataagggacagaaaggagaacctggagaagttccaattgtgacg
ggcatacgaggtcgtcctggaccgatggggcctcccggctcggctggatacagagggcct
cacggacacaaaggaaggccgggactgcgaggtcctccaggctacgatggagagccaggc
ataccaggtcaacctggtgaaccgggacctccgggtcctccaacacacccagggggactg
ggaggccaaatggctcaaggatttgattccaaaacgggaccacaggccatgctgaatggt
gccaggggagaagctggagcaagaggacctcctggaccgagcgggtcacctggccaagct
ggacctcaaggacctcatggagatgttggtgatccgggacacatgggctcacctggacaa
agaggacctgagggtccagcagggaaaccaggcaaagacggagaaccaggaaaatcggga
aatcccggagaagtcggctttcccggatcagctggtccaagaggatttcctggcacaccg
ggacctcctggtctgaaggggcaccgtggtcactctggaccacttggccaaaaaggtgaa
atgggagctgttggatccaagggtgctactgggcctcctggtccaatgggaggacctgga
cccatgggtcctgctgggatgcctggtgagagaggacggcctggaccaggcggtattgcc
ggtaaacgtggtctgcctggcaacattgggaaacctggtccattgggtcccttgggtatc
aatggcccgccagggtatccaggaacacccggtatgaagggacaacctgggcctacaggt
gtccggggtccagaaggtccacagggccagagaggagaaaccggtcaccaaggcagggtt
ggaccagttggcctcaggggacccatgggtacagatggaggcccaggtgctaaaggacca
gtgggcaatttgggtccacaaggtcaaggaggccaccctggaccttctggtccaccagga
cctcagggaagcactggtcagcctggtataaaaggacaagggggagatgttggtgttgca
ggatttaaaggagaagcaggacctaaaggagaaccaggtccgccaggctcccagggagtg
atcggacctcagggtgaggaaggaaagcgaggaccacgtggagatccgggctcggttggc
cctcctggtcccattggtgaaagaggatctcctggaaaccgaggtttccctggtgctgat
ggcctaccgggacctaagggtgctcaaggagatcgtggcatttctggcccagctgggcca
aaaggttctctgggagatctagggcgctcaggagagcctggtctaccaggtgcaaggggt
cttactggtaccccgggagtccagggggcagagggcaagccaggaccactgggtgcaccc
ggtgaggacggccgtccaggccaagcaggaccgattggaaaccgaggccctgcaggaact
atgggcgttccaggccccaaaggctttaatggtgacccaggaaagaccggtgaacaggga
tctgcaggagtgccgggtcaaagaggacctccaggaaaagatggagaagttggccctgca
ggtccccctggtccacctggtcctgcaggagacagaggagaacagggaccaccaggtgtg
aatggattccagggactgccaggaaaccaagggcctcctggagagcctggtaaaccaggt
gaccaaggtattcctggagagattggtcctgtgggtcaaattggaccaaggggtgaacgt
ggaatccctggagagagaggagatctgggtccgaccggtctgcagggacctaaaggaatt
cctggagcacctggtcctgatggaccaaagggcagccctggtcctacaggtgctctggga
gatgtagggccccctggtctccagggaatgccaggagaaagaggaatctcgggacctccc
gggccaaagggagacagaggagcggttggagagaaaggttcagaaggtacaccaggaaat
gatggtgcaagaggagcccctggtctcgttggcccactaggacctgctggacccagtggt
gaaaagggggaaccaggacccaaaggaccagctgggcctccaggatccagaggaacacat
ggagcaagaggtgaccccggtccaattggtgctgtaggattttctggacctcctggtcct
gatggtcaacccggagtcaagggagagcccggagagccagggcagaaaggagatgctggt
tctccagggcctcagggtttggctggtgcccacggacctccgggtccagttggtgtttct
ggactgaaaggaggaagaggaacacagggggctccgggtcctactggtttccctggatca
gcaggaaaagttggaccaccaggtccacctggaccacttggagaagctggaccccaggga
cctccaggaaaagaaggtcctgctggactccgaggtgatcacgggccccctggaaggcaa
ggagagcttggacctcctggtccaccagggagccctggagacaaaggtgaccccggagag
gacggccccacgggtcccgatggtcctccaggtccagctggaacgacagggcagagagga
attgtgggtctccctggtcagcgaggagagcgtgggatgccgggtcttcccggaccagcg
ggtccaccaggaaaacagggagctgcaggacaaacaggagataaaggccccccaggtcca
gttggtgttcctggtgctaatggacctcgaggcgatcccggtcctgatggttctgcagga
tctgacggtccaccaggaaaagatggaaatctcggactaaggggagaccgaggagattct
ggtccagagggtttgattggtcctcaggggcttcctggacctcctggtcctgttggtgct
cccggtgaacaaggaagaagaggagagccaggctcaagaggacctcaaggtccacctgga
tccgctggcaaaagaggactagtgggaccacaaggaccaagaggagataagggtgacctg
ggtgatcatggagagaggggccagaagggacacagaggcttcaccggtctgcagggtctt
cctggacctccgggcacaactggtgagcaaggagctccaggaatagttggaccaagtggc
caaaggggccctcccggacccatcggacctcctgggaaggagggatacctgggccagcct
gggccaatgggacctcctggtactcgtggacttagtggagaaattggaccacagggaccc
cctggggaagatggacctcctggtcctcccggcccaccaggacctcctgtggctgctgtg
gatgacctgttcggcccccacgattacgattctgggcctcctcctcctccagagttcagc
gaagacgaggctctgcccaacagcaacgcctctgccatcattgtccctgttgaccccagt
gttcaggccaccctgaaggctctcagcagtcagatcgacagcatgaagagtcctgatggc
agtaggaaacaccctgccaggacctgtgatgacctgaagagatgctaccccttaaaaaaa
agtggcgagtactgggtggatccaaaccaaggtagtgcagaggatgccatcaaagtgcac
tgcaacatggacactggagagacctgcatctctgccaacccatccactatacctcgtaaa
gtgtggtggactgcctctaggagcaaaccagtgtggtttggagccgacataaatagcggg
acacatttcacctatgggaacaaagatcagcctgtgaactccgtcacggtgcagatgact
ttcatccgcctgctctccaaagaggcatctcagaccatcacctaccactgcaaaaactct
gtgggctacgaagacgcccgaacgggcaacttgaagaaagcagtgatcctcaaaggctcc
aatgacctggagctgaaagctgagggaaacaaccgcttccgatacacgatggtggaggat
tcctgctcgaaagcaagcagcaactggggcaagacagtactcgagtacaggacacagaaa
actgccaggcttcccattgtggatattgcccccgtggacattggtgggcccaatcaggag
ttcggtattgatatcggacctgtgtgcttcttgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (65)   
   KEGG ORTHOLOGY (1)   
   RefGene (61)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (80)   

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