KEGG   Nothobranchius furzeri (turquoise killifish): 107391077
Entry
107391077         CDS       T05163                                 
Name
(RefSeq) embryonic polyadenylate-binding protein-like
  KO
K13126  polyadenylate-binding protein
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03015  mRNA surveillance pathway
nfu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107391077
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107391077
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nfu03019]
    107391077
   03041 Spliceosome [BR:nfu03041]
    107391077
Messenger RNA biogenesis [BR:nfu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     107391077
   mRNA cycle factors
    Stress granule specific factors
     107391077
Spliceosome [BR:nfu03041]
 Complex C
  Other components
   Complex C specific factors
    107391077
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_3
Other DBs
NCBI-GeneID: 107391077
NCBI-ProteinID: XP_015823615
UniProt: A0A8C6MKV4
Position
sgr15:27007447..27025442
AA seq 627 aa
MNGTGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPALRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDEKGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKERE
VEFGTKVVKFTNVYIKNFGEDLTDEKLKEMFSAFGRTLSVRVMKDEKSRSRGFGFVNYAH
HEDAQKAVEGMNGKEISGKIIYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKN
LDDSIDDERLRKEFSPYGTITSAKVMTDAGQSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRREERKAILTNKYMQRLATLRTMASPIVDSYHQSGYYMAVPQLPTRSLYNH
SAVSSVRPVPRWTGYPHPRPQGPYSSQFIGGSLSRRGSTTITTVRQASTQAPRIMSSTQK
TNNIGTQTVGGRTDMAGVPRGGQYKYSSGVRNPLHVVAVPAPMTRSQIVPTPVVEPPAHV
PASEPLTASMLAAAPVMDQKQLLGERLYPMIHALHPNLAGKITGMLLEIDNSELLHMLES
PESLNSKVEEAIAVLQAHQVKDCSPKK
NT seq 1884 nt   +upstreamnt  +downstreamnt
atgaatggcactggaccagcgtatcctctcgcctctttgtatgttggggacctacaccct
gatgttacagaggccatgctttatcagaagttttctcctgctggacccatcatgtcgatc
cgtgtgtgtcgggatatcatcacccgcagatccctgggatatgcctacatcaactttcag
caaccagctgatgccgagtgtgctctggatacaatgaactatgatgtcatcaaaggtcga
ccaattcggataatgtggtctcagcgcgacccagcactgagaaagtctggtgtgggtaac
atctttatcaagaatatggacgagtcaattgacaacaaggcactgtacgataccttttca
gcttttggtaatatcttgtcatgcaaggttgtgtgtgatgagaagggatccaaaggttat
ggctttgttcactttgaaactcaggaggctgcaaatcgtgccatcgaaacaatgaatggg
atgcttctgaatgacagaaaagtctttgttggccactttaagtcacgcaaagaaagagag
gtggagttcgggaccaaagtggtaaagttcaccaatgtgtacatcaaaaactttggggaa
gatcttactgacgagaagctgaaggagatgttttctgcttttgggaggactctcagtgtt
cgggtgatgaaggacgaaaagagtcgatctcgaggatttggttttgtcaactatgcacat
catgaagatgctcagaaggctgttgagggaatgaatggaaaggagatcagtggcaaaatc
atctacgttggccgggctcagaagcgtctggagcgtcagggcgagctgaagcgcaagttt
gaccagatcaaacaggaccgcatccagcgctatcagggggtgaatctgtatgtgaagaac
ttggatgatagcatagatgatgagagactccggaaggagttttccccttatggaacaatc
acgagtgcaaaggtgatgactgacgcaggccaaagcaaaggctttggatttgtgtgtttt
tcttctcctgaggaagcaacaaaagcggtgactgaaatgaacgggagaattgttgcgacc
aagcctctgtatgttgctctggcacagcggagggaggagcggaaagccatcctcaccaac
aagtatatgcagaggcttgctaccctgagaaccatggccagtcccatcgttgattcatac
caccagtccggatactacatggctgtaccacagcttcccactcgctccttgtacaaccac
agtgctgtcagcagcgtgagacctgttcctcgttggacgggatacccacatcccagacct
cagggtccttactcttctcaatttattggaggttctctgtctcgccgtggatcaacaacc
attactacagtcagacaagcttccacccaggcaccacgcattatgtcctccacccaaaag
acaaataacattgggacacagactgtaggagggcgcacagacatggcaggtgttcccaga
ggcggtcagtacaagtattcatctggcgtgaggaaccctctacatgtcgttgctgtgcct
gcacctatgacaagatcacagattgttcctacacctgtggtggagccaccagcccacgtc
ccagcatccgagcctctcactgcctcaatgctggctgcagccccagtcatggatcagaag
cagcttcttggggagaggctgtacccgatgattcatgcccttcacccaaacctggcagga
aaaatcactgggatgctgctggagatagacaattcagagctgctgcacatgctggagtca
cccgagtccctgaactctaaggtggaagaggcaattgctgtcttgcaagctcaccaggta
aaggattgttctccaaagaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (46)   

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