KEGG   Nothobranchius furzeri (turquoise killifish): 107391193
Entry
107391193         CDS       T05163                                 
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
  KO
K08131  collagen type IX alpha
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510  Focal adhesion
nfu04512  ECM-receptor interaction
nfu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    107391193 (col9a3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    107391193 (col9a3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    107391193 (col9a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:nfu00535]
    107391193 (col9a3)
Proteoglycans [BR:nfu00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   107391193 (col9a3)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 107391193
NCBI-ProteinID: XP_015823824
UniProt: A0A1A8UX28
Position
sgr15:30823890..30836596
AA seq 677 aa
MVSSALWVLLLCQLLTSTSAQRPGPRGAPGPPGPAGQPGRDGTDGKPGPPGLPGKAGPKG
KAGIPGSPGKAGLPGLPGIDGLTGPDGPAGKDGPPGEPGEPGPAGPPGPSGRGRPGAPGL
PGTNGLPGGAGPQGPLGAEGLPGHPGPPGPDGPPGLPGTLRDLSGDLLCPAICPPGPPGP
PGMPGFKGHTGHKGDKGELGKDGEKGDPGPPGPAGFPGTVGLQGPRGLRGLQGPMGAVGN
RGLPGFRGKPGLAGIIGKTGDAGEKGPQGFSGPKGEIGKIGAKGAAGGLGPKGDPGMPGR
DGKDGTPGLDGEKGDAGRHGVVGEKGPNGLPGLQGKAGAKGNKGEVGDPGKPGESGPSGE
PGIPGEIGVPGERGIAGPRGAAGGIGPAGNPGPQGVKGYQGVKGGLGDPGLPGPTGLRGE
FGDRGPVGASGAKGDMGVAGSDGLPGENGEPGPFGPVGQKGEPGKQGELGPKGVTGPQGE
LGPRGLPGKPGPLGFQGEQGMPGIAGKTGVPGKLVSEQHIRELCGSLIDDQIAQLAANLR
RPLAPGMVGRPGPAGPPGKPGVSGSVGHPGARGPPGYRGLPGELGDPGPRGDVGEPGDKG
PTGKAIDGPPGDQGYQGLPGVAGTVKDGRDGSPGDPGEPGESGRVGRTGHQGPPGICDTS
ACQGASHVGKSSNPKNL
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggtgtcctcggctctttgggtgcttttgctctgccagctcctgacatccacctcagct
cagagacccggaccccgaggagctcctgggccaccaggacctgcaggacaaccaggaagg
gatggtactgatggcaaacctggacctcctggactaccagggaaagctggtcctaaagga
aaagcaggaataccaggatcaccaggaaaagcaggcctgccgggacttccaggaatcgac
ggtttgactggcccggacggtcctgctggtaaagatggacccccaggggagccgggtgag
ccgggacctgccgggcctcctggaccttctggcagagggagaccaggagctccaggatta
cctggaaccaacgggttgccgggcggagcgggaccccagggtcctctgggtgctgagggt
cttcctggacatccaggacctcctgggcctgatgggcctcctggacttcctggtactctt
cgtgaccttagcggtgaccttctgtgtcctgcaatctgtccccctggtccccccggtcca
cctgggatgccaggattcaagggacacacaggacacaaaggagacaagggagagcttgga
aaagatggagagaagggggaccctggtccaccgggacctgcaggttttcctggcaccgtg
ggtctgcagggcccacgtggtctgagaggtttgcaaggccctatgggagctgtaggcaac
agaggcctgcccggtttcagaggcaagcctggcttagctggcatcatcggcaagacaggt
gatgctggggaaaagggaccacagggtttcagtgggcctaaaggagaaattggtaaaatt
ggtgccaaaggagctgctgggggcctgggacccaaaggggatcccggaatgcctggtcga
gacgggaaagatgggacaccggggctggatggcgagaagggtgatgctggacgccatgga
gtagtaggagagaaagggccgaacggacttcctggtctgcaagggaaggcaggagcaaag
gggaataaaggagaagtcggtgatccaggaaagcctggggagtcaggaccctctggagag
ccaggtattcctggtgagattggtgtcccaggagagagggggatagcaggtcccagagga
gcggcaggagggattggacctgcaggaaacccgggtcctcagggagtcaaaggctaccag
ggagtcaaaggaggtttgggtgacccgggacttcctgggccaacgggacttcgtggagag
tttggtgacagaggtccggttggggcttcgggagctaagggagacatgggtgtggcagga
agtgacggtttaccaggagagaatggagagcctggcccttttggaccagttggacaaaaa
ggagagcctggcaagcaaggtgaactggggccaaagggcgtaacaggtcctcaaggggag
ctcgggccaagagggctcccaggaaaaccaggaccattgggcttccagggggaacaggga
atgccgggaatcgcaggaaaaaccggagtacctggtaagctggtgagtgagcagcacatc
agggagctgtgtggctccttgatcgatgatcagatcgcacagctggctgctaacctccga
agacctctggcacctggaatggtaggccgccccggcccagcagggcctccgggaaagcca
ggagtctctggttctgttgggcatccaggggcccgcgggccaccagggtacagaggcctg
cctggagagctcggagatcctggtcccagaggtgacgtcggtgagccaggtgataaggga
cccactggcaaagccattgatgggccccctggagaccaaggataccaaggtcttccagga
gtagctggtaccgtcaaagacggtcgtgatgggtctccgggagatccaggcgagcctgga
gagtcaggcagggtaggcaggactgggcaccagggtcctcctgggatctgtgacacatca
gcctgccagggagcctcgcatgttgggaaatcctccaaccccaaaaatctttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (10)   
   RefSeq(nuc) (4)   
   GenBank (3)   
   EMBL (3)   
Protein domain (1)   
   Pfam (1)   
All databases (56)   

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