KEGG   Nannospalax galili (Upper Galilee mountains blind mole rat): 103739958
Entry
103739958         CDS       T03372                                 
Symbol
Col6a1
Name
(RefSeq) collagen type VI alpha 1 chain
  KO
K06238  collagen type VI alpha
Organism
ngi  Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi04151  PI3K-Akt signaling pathway
ngi04510  Focal adhesion
ngi04512  ECM-receptor interaction
ngi04820  Cytoskeleton in muscle cells
ngi04974  Protein digestion and absorption
ngi05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:ngi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    103739958 (Col6a1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    103739958 (Col6a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    103739958 (Col6a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    103739958 (Col6a1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    103739958 (Col6a1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    103739958 (Col6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ngi04147]
    103739958 (Col6a1)
   00536 Glycosaminoglycan binding proteins [BR:ngi00536]
    103739958 (Col6a1)
Exosome [BR:ngi04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   103739958 (Col6a1)
Glycosaminoglycan binding proteins [BR:ngi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   103739958 (Col6a1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   103739958 (Col6a1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 YcaO ETF
Other DBs
NCBI-GeneID: 103739958
NCBI-ProteinID: XP_008838678
Position
Un
AA seq 1036 aa
MVTGRPASNMRLACVLLPLLLQACWVAAQDVLGPPKAIAFQDCPVDLFFVLDTSESVALR
LKPYGALVDKVKAFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPSGRD
ELKASVDAVKYFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGG
LEDAVNEAKHLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGHSRDAEEAISQT
IDTIVDMIKNNVEQVCCSFECQPARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGKPGD
LGPVGYQGMKGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGEMGYPGLPGCKGSPGF
DGIQGPAGPKGDAGAFGLKGEKGEAGADGEAGRPGSSGPPGDEGEPGEPGPPGEKGEAGD
EGNVGPDGAPGERGGPGEGGPRGTPGVRGPRGDPGEAGPQGDQGREGPVGIPGDPGEAGP
IGPKGYRGDEGPPGPEGLRGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGSR
GPPGLNGTKGYPGLKGDEGEAGDPGEDNNDISPRGVKGAKGYRGLEGPQGPPGHVGPPGP
DECEILDIIMKMCSCCECTCGPIDILFVLDSSESIGLQNFEIAKDFIVKVIDRLSKDELV
KFEPGQSHAGVVQYSHNQMQEHVDMRSPNIRNAQDFKEAVKKLQWMAGGTFTGEALQYTR
DRLLPPTQNNRIALVITDGRSDTQRDTTPLSVLCGPDIQVVSVGIKDVFGFVAGSDQLNV
ISCQGLLSQGRPGISLVKESYAELLDDTFLKNITAQICIDKKCPDYTCPITFSSPADITI
LLDGSASVGSHNFDTTKLFAKRLAERFLSAGRTDPSQDVRVAVVQYSGPGQQQPGRPALQ
FLQNYTVLANSVDNMDFFNDATDINDALSYVTRFYREASSGGTKKRVLLFSDGNSQGATA
EAIEKAVQEAQRAGIEIFVVVVGPQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPSYQAL
LRGVFYQTVSRKVALG
NT seq 3111 nt   +upstreamnt  +downstreamnt
atggtgaccggcaggccagccagcaacatgaggctggcttgtgttctgctgccactgctg
ctacaggcctgctgggtggctgcacaggacgtcctggggccccccaaggccatcgccttc
caagactgccctgtggatctattcttcgtactggacacctcagagagtgtggccttgagg
ctgaagccctatggggccctggtggacaaggtgaaggccttcaccaaacgcttcatcgac
aacctgagagacagatactaccggtgtgacagaaacctggtttggaacgcgggtgcactg
cactatagtgatgaagtagagattatccgtgggctcacacgcatgcccagcgggcgagat
gagctcaaggctagtgtggatgcagtcaagtacttcggcaagggcacttacactgactgt
gcaatcaagaaggggctggaggagcttctcatagggggctcccacttaaaggagaacaag
tacttgattgtagtgactgacggacacccgctggagggttacaaggagccctgtgggggc
ctggaggatgcagtgaatgaggccaagcacctgggcatcaaagtcttctctgtggccatc
acacctgaccacctagagccacgtctaagcatcatcgccacagaccacacgtaccggcgc
aacttcacagcagctgactgggggcacagccgcgatgcagaggaggccatcagccagacc
atcgacaccatcgtggacatgattaaaaacaatgtggagcaagtgtgctgctctttcgag
tgccagcctgccagaggaccaccggggccccggggtgaccctgggtatgagggagagcga
ggaaagccaggtcttccaggagagaagggagaagctggagaccccggaaaacccggggac
cttggaccagtcgggtaccagggtatgaagggagaaaaagggagccgtggggagaagggc
tccagaggacctaaaggctacaagggtgagaagggcaagcgtggcatcgatggagtggat
ggcatgaagggggaaatgggatacccagggctgccaggttgcaagggctcgccaggattc
gatggaattcaaggacccgcgggccccaagggtgatgctggtgcctttggactgaaagga
gaaaagggtgaagctggagcagatggtgaggcggggagaccagggagctcagggccacct
ggagatgagggtgagcctggagagcctggtccccctggagagaaaggagaggccggtgat
gaggggaacgttggtccagatggtgcccctggagagaggggtggccctggagaaggagga
cctcggggaactcccggtgtgcggggcccaaggggagacccgggcgaagctggaccccaa
ggtgaccagggaagagaaggccctgtcggcatccctggagacccgggtgaggctggcccc
attggacctaaaggataccgaggtgatgagggccccccaggccctgagggtctcagaggg
gccccaggacctgccggcccccctggagatccagggttgatgggtgaaaggggtgaagat
ggtcccccaggaaatggcaccgaaggtttcccaggctttcctgggtatccaggcagcagg
ggcccccctgggctgaatggcacaaaaggctaccctggcctcaagggggatgagggtgaa
gccggggaccctggagaggataacaatgacatttcaccccgcggggtcaaaggggcaaag
gggtaccgtggcttggaaggaccccagggacctccaggacacgtgggaccacctgggcca
gatgaatgcgagatcttggatatcatcatgaaaatgtgctcctgctgcgaatgtacatgt
ggccccatcgacattctcttcgtgctggacagctctgagagtatcggcctgcagaatttc
gagattgccaaggacttcattgttaaggtcattgacagactgagcaaggatgagctggtc
aagtttgagccagggcagtcgcatgcaggcgtggtgcagtacagccacaaccagatgcag
gagcatgtggacatgcggagccccaacatccgcaacgctcaggacttcaaagaggctgtc
aagaagctgcagtggatggcgggtggcacgttcacaggagaggcactgcagtacacccgg
gaccggctgctaccacctacccagaacaaccgcattgctctggtcatcacagatgggcgc
tctgatactcaaagggacaccacacccctcagtgtgctctgtggcccagatattcaggtg
gtctccgtgggcatcaaggatgtttttggctttgttgcgggctctgaccagctcaatgtc
atttcctgccaaggcctgttatcccaaggccggccaggcatctccctggtgaaggagagc
tatgcagagcttctggacgacaccttcctaaagaacatcacagcccagatctgcatagac
aagaagtgtccggattatacctgtccaatcacgttctcctcccctgctgacatcaccatc
ctgctggacggctctgccagtgtaggcagccacaatttcgacactaccaagctcttcgcc
aagcgcctggctgagcgcttcctgtctgcaggccggacggatccctcccaggatgtgcgg
gtggccgtggtacagtacagcggcccgggccagcaacagccgggacgaccagctcttcaa
ttcttacagaactacactgtgctggccaactctgtggacaacatggatttcttcaacgat
gccactgacatcaatgacgccctgagctacgtaacgcgcttctaccgggaagcctcttca
ggaggcaccaagaagagggtgctgttgttctcagatggtaattcacagggggccacagca
gaggccattgagaaggctgtgcaggaggcccagcgtgcaggcattgagatctttgtggtg
gtggtgggaccccaggtgaatgagcctcatatccgagtgctggtcactggcaagaccgca
gagtatgacgtggcctttggtgagcgccacctattccgcgtgccgagttaccaggccttg
cttcgcggtgtcttctaccagacagtctccaggaaggtggcactgggctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (44)   

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