KEGG   Neisseria gonorrhoeae NCCP11945: NGK_2421
Entry
NGK_2421          CDS       T00728                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
ngk  Neisseria gonorrhoeae NCCP11945
Pathway
ngk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ngk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NGK_2421
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ngk03021]
    NGK_2421
   03400 DNA repair and recombination proteins [BR:ngk03400]
    NGK_2421
Enzymes [BR:ngk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NGK_2421
Transcription machinery [BR:ngk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NGK_2421
DNA repair and recombination proteins [BR:ngk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NGK_2421
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: ACF31023
UniProt: B4RQW3
Position
2019696..2023871
AA seq 1391 aa
MNLLNLFNPLQTAGMEEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIELAAPVAHIWFLK
SLPSRLGMVLNMTLRDIERVLYFEAFVVTDPGMTPLQRRQLLTEDDYYNKLDEYGDDFDA
KMGAEGIRELLRTLDVAGEIEILRQELESTGSDTKIKKIAKRLKVLEAFHRSGMKLEWMI
MDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELHAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PYLRLHQCGLPKKMALELFKPFIFHKLEKQGLASTVKAAKKLVEQEVPEVWDILEEVIRE
HPIMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDRINAKGEGSLFADVKEVHRAYH
TKQVELGTKITVRLREWVKNEAGEFEPVVNRYETTVGRALLSEILPKGLPFEYVNKALKK
KEISKLINASFRLCGLRDTVIFADHLMYTGFGFAAKGGISIAVDDMEIPKEKAALLAEAN
AEVKEIEDQYRQGLVTNGERYNKVVDIWGRAGDKIAKAMMDNLSKQKVIDRDGNEVDQES
FNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFIATHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSDGFVMKAVVQGGDVIEALRDR
ILGRVTASDVVDPSSGETLVEAGTLLTEKLVDMIDQSGVDEVKVRTPITCKTRHGLCAHC
YGRDLARGKLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSNGTA
RFSSQMRYVANNKGELVVIGRSCEVVIHDDIGRERERHKVPYGAILLVQDGMAIKAGQTL
ATWDPHTRPMITEHAGMVKFENMEEGVTVAKQTDDVTGLSALVVIDGKRRSSSASKLLRP
TVKLLDENGVEICIPGTSTPVSMAFPVGAVITVREGQEIGKGDVLARIPQASSKTRDITG
GLPRVAELFEARVPKDAGMLAEITGTVSFGKETKGKQRLIITDVDGVAYETLISKEKQIL
VHDGQVVNRGETIVDGAVDPHDILRLQGIEALARYIVQEVQEVYRLQGVKISDKHIEVII
RQMLRRVNIADAGETGFITGEQVERGDMMAANEKALEEGKEPARYENILLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKQDELRGLKENVIVGRLIPAGTGLTYHRSRHQQWQGVE
QETAETQVTDE
NT seq 4176 nt   +upstreamnt  +downstreamnt
atgaatttgttgaacttatttaatccgttgcaaaccgcaggtatggaagaagagtttgat
gccatcaaaatcggtattgcctctcccgaaaccatccgctcatggtcttatggcgaagtt
aaaaaacctgaaaccatcaactaccgtacgttcaaacccgagcgcgacggcttgttctgc
gccaaaatctttggcccggtcaaagactacgaatgcttgtgcggaaaatacaaacgattg
aaatttaaaggcgtaacctgtgaaaaatgtggcgtagaagttaccctgtccaaagtgcgc
cgcgaacgcatgggccatatcgaattggctgcacccgttgcccatatttggttcttgaaa
tccctgccttcccgcttgggtatggtattgaacatgacgttgcgtgatatcgaacgcgta
ttgtactttgaagcattcgtggtgaccgatcccggcatgactccgttgcaacgtcgtcaa
ttgctgactgaagacgattactacaacaaactggacgaatacggcgacgacttcgatgcc
aaaatgggtgcggaaggtatccgcgaattgttgcgaaccttggatgtagcaggcgaaatc
gaaatcctgcgccaagagcttgaatcgaccggttctgacaccaaaatcaaaaaaatcgct
aaacgcttgaaagtattggaagccttccatcgttccggtatgaagctggagtggatgatt
atggatgtgctgccggtattgccgcctgatttgcgtccgttggttccgttggacggcggc
cgttttgccacttccgatttgaacgatttgtaccgccgcgtcatcaaccgcaacaaccgt
ctgaaacgcctgctggaactgcatgcgcctgacatcatcgtccgcaacgaaaaacgtatg
ttgcaagaagcggttgactcgctgttggataacggccgtcgcggtaaagccatgaccgga
gccaacaaacgtccgctgaaatcgttggcagatatgattaaaggtaaaggcggccgcttc
cgtcaaaacctgttgggcaaacgtgtggactactccggccgttccgtgattaccgtaggc
ccatacctgcgtctgcaccaatgcggtttgccgaaaaaaatggcgttggaactgttcaaa
ccatttattttccacaaattggaaaaacaaggtttggcgtctaccgttaaagctgcgaaa
aaattggtagaacaagaagtacctgaagtatgggatatcttggaagaagtcatccgcgaa
catccgattatgttgaaccgtgcgccgaccctgcaccgtttgggtattcaagcgttcgag
cctattctgatcgaaggtaaagcgattcagttgcacccattggtgtgtgccgcatttaat
gccgactttgacggtgaccaaatggcagtacacgttccattgagcttggaagcgcaaatg
gaagcacgcacgctgatgctggcttcaaacaacgtattgtctcctgccaacggcgaaccg
attatcgtaccttcccaagacatcgtattgggtctgtactacatgacccgcgaccgtatc
aatgccaaaggcgagggcagcctgtttgccgatgtgaaagaagtgcatcgtgcataccat
accaaacaggtcgagctgggtacaaaaataaccgtacgtctgcgcgaatgggtgaaaaac
gaagcaggtgagtttgagcctgtcgttaaccgttacgaaacaaccgtcggccgtgcattg
ttgagcgaaatcctgccgaaaggcctgccgtttgaatatgtcaacaaagcgttgaagaaa
aaagaaatttccaagctgattaacgcatcgttccgcctgtgcggcttgcgcgatacggtt
atcttcgccgaccacctgatgtacaccggtttcggatttgcggcaaaaggcggtatttcc
attgccgttgacgatatggaaattccaaaagaaaaagcggccttgctggctgaagccaat
gccgaagttaaagaaatcgaagaccaataccgtcaaggtttggttaccaacggcgaacgc
tacaacaaagtggtggatatttggggtcgtgccggcgataagattgctaaagcgatgatg
gacaacctgtccaaacaaaaagttatcgaccgtgacggcaacgaagtcgatcaagagtca
ttcaactccatttatatgatggcggactccggtgcccgtggttctgcggctcagattaaa
cagttgtccggtatgcgcggtttgatggcgaaacctgacggatcgattattgaaacgccg
attacctcaaacttccgcgaaggtctgaccgtattgcaatactttattgcgacccacggt
gcgcgtaagggtttggcggataccgcgttgaaaaccgcgaactccggttacctgacccgt
cgtctggtagacgtaactcaagacttggtcgttgttgaagacgattgcggtacttcagac
ggctttgtcatgaaggcagtggtacaaggcggtgatgtgattgaagcattgcgcgatcgt
attttgggtcgtgttaccgcgtctgacgttgtcgatccgtcaagcggcgagactttggtt
gaagccggtacgttgttgactgaaaaactggtggatatgattgaccaatccggtgtcgat
gaagtcaaagtccgtactccgattacttgtaaaacccgccacggtctgtgcgcgcactgt
tacggccgcgacttggcgcgcggcaaactggtcaatgccggcgaggcagtcggcgtgatt
gcggctcagtctattggtgaaccgggtacccagttgaccatgcgtacgttccacatcggt
ggtgcggcatcccgtgcggcagcagccagccaagtcgaagccaaatccaacggtacggca
cgtttcagcagccaaatgcgttatgttgccaacaacaaaggcgagttggttgtcatcggc
cgttcttgcgaagtcgtgattcacgatgacatcggccgtgaacgcgaacgccacaaagta
ccttacggtgccatcctgctggtacaagacggtatggccattaaagccggtcaaaccttg
gcaacttgggatccgcatacccgtccgatgattaccgaacatgcaggtatggtgaaattc
gagaacatggaagagggcgttaccgttgcaaaacaaaccgatgatgtaaccggtttgtcc
gctttggtagtgattgacggtaaacgccgttcctctagtgcttccaaactgctgcgtccg
actgtgaaactcttggacgaaaacggcgtggaaatctgtattcccggtacgtccactccg
gtttcgatggcattccccgttggtgcggtgattaccgtacgcgaaggtcaggaaatcggt
aaaggcgacgtattggcgcgtattccgcaagcctcttccaaaacccgcgacattaccggc
ggtctgccgcgcgttgccgagctgtttgaagcacgcgtgccgaaagatgccggtatgctg
gcggaaattaccggtaccgtttccttcggtaaggagaccaaaggcaaacaacgtctgatt
atcactgacgtggacggtgtagcatacgagactttgatttccaaagagaaacaaattctg
gtacatgacggtcaagtggtaaaccgaggcgaaaccattgtggacggcgcggtcgatccg
cacgatattctgcgtctgcaaggtatcgaagcactggcacgctacattgtccaagaggtg
caagaggtttaccgcctgcaaggtgtgaagatttccgataaacacatcgaagtcatcatc
cgtcaaatgttgcgccgtgtgaacattgcggatgccggcgaaaccgggtttattaccgga
gagcaggtcgaacgcggcgatatgatggcggccaatgaaaaagctttggaagaaggcaaa
gagccggcacgttacgaaaacatattgctgggtattaccaaagcctccctgtccaccgac
agcttcatttctgccgcatcgttccaagaaaccacccgtgtgttgaccgaagctgccatc
atgggcaaacaagacgaactgcgcggtctgaaagagaatgtcatcgtcggtcgcctgatt
cctgccggtaccggtttgacttatcaccgcagccgtcatcagcaatggcaaggggtagag
caggagactgctgaaacccaagtaacggatgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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