KEGG   Naegleria gruberi: NAEGRDRAFT_82942
Entry
NAEGRDRAFT_82942  CDS       T01241                                 
Name
(RefSeq) damage-specific DNA binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
ngr  Naegleria gruberi
Pathway
ngr03420  Nucleotide excision repair
ngr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ngr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    NAEGRDRAFT_82942
  09124 Replication and repair
   03420 Nucleotide excision repair
    NAEGRDRAFT_82942
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ngr04121]
    NAEGRDRAFT_82942
   03400 DNA repair and recombination proteins [BR:ngr03400]
    NAEGRDRAFT_82942
Ubiquitin system [BR:ngr04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     NAEGRDRAFT_82942
DNA repair and recombination proteins [BR:ngr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      NAEGRDRAFT_82942
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      NAEGRDRAFT_82942
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 8849898
NCBI-ProteinID: XP_002681776
JGI: Naegr1_82942
UniProt: D2V2C4
AA seq 1103 aa
MSFNYVSYAYKPTTIGCSASGNFTSPSDINLIMCKNQYLQVNRLSEEGVSSVVEFEAPGR
IDTMSLFRPSGEKQDLLFITIEDTFFTLGFIDGKIETLSSGSIDDPVGRRSESGSITTID
PLCRAVALSIYEGLLKIIPFENNKHQFKEAFNVRLEELNVIDIAFLESLGSKSKSGPTFA
LLYQDHVGSRHVKTYEVKTLDKDMEESSLNQLNVDHGANILIPVPAPLGGVICVGEAQVS
YINESNKNHSVASPANSRMAIRSYGKLDNTRWFLGDQSGQLYLLSLQVSDSEVTGLTLKE
LGVTSISSCISYLDNGYVFIGSNYGDSQVIRISDELNPETNSYFEVFQTYSNIGPIVDFC
FVDADKQGQGQIVTCSGAFKDGSLRIIKNGIGIEELTTISDLVGLNRIWSLKTETGEEKY
LVMSFTGQTLISSVDNEEIGEAKIPGFDVDSTTVLCDTVIGNNYLQVTDKTARLVSSHTL
ELIDEWKPSSGTISLAASNPTQLVVSLGEGKLVYIEISAQSLKQIQQTKLDYEVSCIDIS
PEEGKISSTVCAVGMWTEISVRVLTLPSFDILTVQELGGEILPRSILMPTFEGINYLMCG
LGDGHLFTFKMDRGMGILTDKKRIVAGSKPIMLRPFISKDRQLNVFAASERPTIIYSRNQ
KLVYSNVNLGEVNDMCSFNHESFPFHIAIANENSILIGQIDEIQKLHIKTVQLHAQPTKI
CHQPSTKAYGLLITQFENPETSAIFSLDENNFEKKSEIRLEGNELGQSIISCKFTDDDNE
YFIVGTAITEGDEEEPSKGRILVLQVQDDKLVLKAEKDVKGAVMVLHSFNGKLLAGVSGR
LMLFKWAESDDGDNKDLVQECSCSGGIYILDIDSHGDFILIGDMMKSVHLFVYENPEEQH
VSGNLRLISKDYQYSWLSCSLMLNESEYVAVDQQGNMITLKKNDEAASEEERKQLVRVGK
YYCSDRVNRIQPGFIGMRFANSSSDINTQPVKTALFGTISGGIGVLAQLPPETFAFVTKI
QKAMSSVVTGLANISRETYRQYRSERTREDSVGFIDGDFVESFLEFDFETQQRVIEELSN
NHQEQITLEELVKNIEDLSHLIH
NT seq 3312 nt   +upstreamnt  +downstreamnt
atgtccttcaattatgtttcctacgcttacaagcctaccacaattggttgttcggcttcc
ggaaactttacatcaccaagtgatatcaatttaatcatgtgtaaaaatcaatatcttcaa
gtaaatagattgagcgaagaaggtgtttcttccgtggttgaatttgaagcacctggaaga
attgataccatgtctttattcagaccatcaggagaaaaacaagatttactttttattaca
attgaagatacattctttacacttggatttattgatgggaaaatagaaacactttccagt
ggttccatagatgaccctgtcggaagaagaagtgaaagtggctccatcacaacaattgat
cctctctgtcgtgctgttgcactctcaatatatgaaggattgttaaaaattattcctttc
gaaaataacaaacatcaatttaaagaggctttcaatgttagattggaggaattgaatgtt
attgatattgccttcttagaaagtttaggatcaaaatccaaatctggacctacttttgct
ttactctatcaagaccatgttggatcaagacatgttaaaacgtatgaagttaaaactctt
gacaaggacatggaagaatcatccctcaatcaattaaatgttgatcatggagccaatatt
ttaattccagtccctgctcctttgggtggtgtaatttgtgttggagaggctcaagtttca
tacattaacgaatctaataagaatcattccgtggcatctccagccaactcacgtatggct
atccgttcttatggaaagttagataatactagatggtttttgggtgaccaatcgggtcaa
ttatatttattaagcttacaagtttctgatagcgaagttactggattgactcttaaggag
ctcggagttacatcaatttcatcatgcatttcttacttggataatggatacgtttttatt
ggatcaaattatggagactcacaagtcatacggattagtgatgaattgaacccagaaacc
aactcatactttgaagttttccaaacctattctaatattggacctattgtagatttttgt
tttgttgatgccgataaacaaggtcaaggtcaaattgttacatgttcaggtgcctttaag
gatggttcactccgaattatcaagaatggtattggtattgaagaattgaccaccatttct
gatttggttggtttaaatcgtatatggtcccttaaaactgaaactggagaagaaaagtac
ctcgtcatgtcttttaccggacaaactcttatttcctcagttgataacgaagaaattgga
gaagctaagattcctggttttgatgtggattcaaccactgtattgtgtgatactgttatt
ggaaataattacttgcaagttaccgataaaactgcaagattagtaagctctcatactttg
gaattgattgatgaatggaaaccgtcaagtggcaccatcagtcttgctgcatcaaatcca
actcaattggtagtatcccttggtgaaggaaaacttgtatatattgaaatttctgctcaa
tcattgaaacaaattcaacaaactaaattggattatgaagtttcttgcattgacattagt
cctgaagaaggtaaaatatcatctactgtttgtgcagttggtatgtggacagaaatttct
gtcagagtattgacacttccatcttttgacattctcactgttcaagaattgggaggagaa
attttaccgagatccattttaatgccaacctttgaaggtattaattatttaatgtgtggc
cttggtgatggtcatttgttcactttcaaaatggatagaggtatgggcattttgactgat
aagaagagaattgttgctggaagtaagccaatcatgttgagaccatttatttccaaggac
agacaattgaacgtatttgctgcctctgagagaccaaccattatttacagcagaaatcaa
aaacttgtatattctaatgttaatttgggagaagttaatgatatgtgttcattcaatcac
gaaagtttcccattccacattgccattgctaatgaaaattccatcctcattggtcaaatt
gatgaaattcaaaaacttcacattaagactgtccaattacacgctcaaccaactaagatt
tgccatcaaccttcaaccaaggcttatggtcttttaattactcagttcgaaaacccagaa
actagtgccatcttctccttggatgaaaacaactttgagaaaaagtcagaaatccgtctt
gaaggtaatgaattaggtcaatccattatttcatgcaagttcacagatgacgataatgaa
tattttattgttggtacagcaattactgaaggtgatgaagaggaaccatcaaagggaaga
attctcgttcttcaagttcaagatgacaaactcgtactaaaggctgaaaaagatgttaag
ggagctgtcatggttctccactcattcaatggaaaattattggctggtgtctctggtaga
cttatgctcttcaaatgggctgaatctgatgatggtgataataaggatctcgtccaagaa
tgttcatgtagtggaggtatctatattcttgatattgatagtcatggagactttattctt
attggtgacatgatgaaatctgtacatttattcgtttatgaaaatccagaagaacaacat
gtctctggtaatctcagactcatttctaaggattatcaatactcttggttaagttgttcc
ctcatgctcaatgagagtgaatatgttgctgttgatcaacaaggaaatatgattacactt
aaaaagaatgatgaggctgcctctgaagaagaaagaaaacaacttgttcgtgtcggcaag
tattactgctctgatcgtgtaaatagaattcaacctggatttattggaatgagatttgcc
aattcatcctctgacattaatactcaacctgtaaagactgctctctttggtaccattagt
ggtggtattggtgttttggctcaattacctccagagacttttgcatttgtgacaaagatt
caaaaggctatgagtagtgttgtgactggtctggccaatatttctcgtgaaacctatcgt
caatacagatcggagagaactagagaagactcggttggttttattgatggtgactttgtg
gaatccttcttggaatttgattttgaaactcaacaacgagtcattgaagaattgtcgaat
aatcatcaagaacaaatcactttggaagaacttgttaagaatattgaagatttgtctcac
ttgatccactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (36)   

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