KEGG   Fusarium vanettenii: NECHADRAFT_102824
Entry
NECHADRAFT_102824 CDS       T01612                                 
Name
(RefSeq) hypothetical protein
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
nhe  Fusarium vanettenii
Pathway
nhe03018  RNA degradation
nhe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nhe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NECHADRAFT_102824
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NECHADRAFT_102824
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nhe03019]
    NECHADRAFT_102824
   03041 Spliceosome [BR:nhe03041]
    NECHADRAFT_102824
Messenger RNA biogenesis [BR:nhe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     NECHADRAFT_102824
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     NECHADRAFT_102824
Spliceosome [BR:nhe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    NECHADRAFT_102824
SSDB
Motif
Pfam: LSM SM-ATX LSM14
Other DBs
NCBI-GeneID: 9665419
NCBI-ProteinID: XP_003050056
JGI: 102824
UniProt: C7YU33
Position
9
AA seq 83 aa
MASQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNHTKLP
KILLNGNNICMLIPGGEGPEGAA
NT seq 252 nt   +upstreamnt  +downstreamnt
atggcatcccaactgctgcccctcgagcttatcgacaagtgtgttggttcaaggatatgg
gtcatcatgaagggtgataaggaattcagcggaactcttcttggcttcgacgactatgtg
aacatggttttggaggatgtgactgagtttgactactccggtaaccacacaaagctgccc
aagattttgctcaacggtaacaacatttgcatgttgatccctggaggcgagggaccagag
ggcgcggcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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