KEGG   Nitrosococcus halophilus: Nhal_3086
Entry
Nhal_3086         CDS       T01198                                 
Name
(GenBank) excinuclease ABC, C subunit
  KO
K03703  excinuclease ABC subunit C
Organism
nhl  Nitrosococcus halophilus
Pathway
nhl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nhl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Nhal_3086
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nhl03400]
    Nhal_3086
DNA repair and recombination proteins [BR:nhl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Nhal_3086
SSDB
Motif
Pfam: UvrC_RNaseH_dom GIY-YIG HHH_5 UVR HHH HHH_3 HHH_2
Other DBs
NCBI-ProteinID: ADE16138
UniProt: D5BZC4
Position
3160109..3161923
AA seq 604 aa
MLNPSFDAYAFLKNLTSRPGVYRMLDAEGKVLYVGKARNLKRRLSSYFRKTGLATKTHRL
VSQIFDIEITVTHTENEALILENNLIKALQPRYNVLLRDDKSYPYIFLSADDFPRLGFHR
GAKRTPGQYFGPYPSVGAMRQTLRLLQEVFPVRQCEDSFYRNRSRPCLQYQIKRCTAPCV
GLIDKERYHQDVQHAVMFLEGRDQQVIDELVARMEEASQQLAFEQAAYYRDRIASLRRIQ
ERQYISGKEVDIDVLGATVKGSTACVEVFFIRGGRNLGNKTFLPKFQGNLTPRELLSAFI
PQYYLNREIPPTLVLSHQPEDMELLTEVLSEQAGRKIMLLRPTRGSKIRWVKMALTNAEI
NLNRCLVKKTSIVERFKSLQQLLGWTNLPQRLECFDISHTRGEATVASCVVFDREGPNST
DYRRFNIEGVTPGDDYAALRQALTRRYRRLKKGEGILPDLLVIDGGKGQLAQAVTVLREI
GIEETTVLGIAKGPERKAGQETLLLAGRDTPVIVAPDSPALHLLQHIRDEAHRFAITSHR
KRRIKGHKISPLETIPGLGPKRRQRLLTQLGGLREVARAGVEELARVPGISPGLAQRIYD
SFHG
NT seq 1815 nt   +upstreamnt  +downstreamnt
atgctaaacccatcttttgatgcttacgcttttctaaagaatctgacttctcgtccaggt
gtttaccgtatgctggatgcagaaggtaaagtcctctatgtgggtaaagcacgaaatctc
aaaaggcgtttgagcagttattttcgaaaaactggcctagcgactaagacacacagactg
gtcagtcaaattttcgatattgaaatcaccgtcacccacaccgaaaatgaagcactgatt
ctagaaaataatctcatcaaagcgttgcagccccgctataatgttctgttaagggatgat
aaaagctacccttatatttttctttctgctgacgatttcccccgcttaggattccatcgg
ggggcgaagcgaacgcccggccaatactttggcccttacccaagcgtgggggcaatgcgg
cagacgctgaggctactccaggaagtgtttcctgtacgtcagtgtgaagatagcttttat
cgcaatcgctctcgtccctgcttacaatatcagattaagcgttgcaccgctccctgtgtt
ggcctgattgataaggagcgttatcaccaggatgttcagcatgcggtaatgtttctggag
gggcgggatcaacaggtcattgacgaattggtcgcacggatggaggaggcctcccaacag
cttgcctttgaacaagcggcctattaccgggatcggatcgccagcttgcgccggatccaa
gaacgtcagtatatcagtggcaaggaagtggatatcgatgtgcttggagcaacggtcaaa
gggagcacagcctgcgtagaagttttttttattcgcggtggacggaacttgggaaataaa
actttcttaccaaaatttcaagggaaccttaccccaagagagttgctttctgcctttatt
ccccaatattacctcaaccgagagattccaccaaccctggttctaagccatcaacctgag
gacatggaactattgaccgaagtgctcagcgagcaggctggaagaaaaattatgctgctc
aggccgacccgaggttctaaaatacgctgggtaaagatggccttgacaaatgccgaaatt
aacttaaatcggtgtcttgtaaagaagaccagcattgtggaacggtttaagagtctgcaa
caattacttggatggactaatttgccgcaacgccttgaatgttttgatattagccatact
cggggagaggccacggtggcttcctgtgtggtatttgacagagaggggcccaatagcacc
gattaccggcgatttaacattgaaggggtcactcccggggatgattacgctgctctgcgc
caagccctaacccggcgttatcgccgacttaagaaaggggagggtatactccccgatttg
ctggtcattgacggtggtaagggacaattggcccaggcggttaccgtactcagagaaata
gggattgaggaaactacggtactaggaattgccaagggacccgaacgtaaagcggggcag
gaaaccctattgctggcggggcgtgatactccagtaatagtcgcacccgattctcccgcc
ttgcatctattgcaacatatccgtgatgaagcccaccgttttgccataaccagccatcgt
aagcgccggattaaaggacataagatttctcccttggagacaatcccaggtcttggtccc
aagcggcgccagaggctattgactcaattaggcggattgcgagaagttgcccgagcaggg
gttgaagagttagctcgcgtgccgggaatcagcccgggtttggcacaacgtatttatgat
tcctttcatgggtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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