KEGG   Niabella ginsenosidivorans: A8C56_08730
Entry
A8C56_08730       CDS       T04418                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
nia  Niabella ginsenosidivorans
Pathway
nia03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nia00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A8C56_08730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nia03019]
    A8C56_08730
   03016 Transfer RNA biogenesis [BR:nia03016]
    A8C56_08730
Enzymes [BR:nia01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A8C56_08730
Messenger RNA biogenesis [BR:nia03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A8C56_08730
Transfer RNA biogenesis [BR:nia03016]
 Prokaryotic type
  tRNA degradation factors
   A8C56_08730
SSDB
Motif
Pfam: RNB OB_RNB CSD2 OB_Dis3 RNase_II_C_S1 S1
Other DBs
NCBI-ProteinID: ANH81053
UniProt: A0A1A9I0L4
Position
2085158..2087185
AA seq 675 aa
MTKKTKKKKSRSSSGSEPLLKGVLEVTRSGRGFVIVPGLEEDILIRPEDLKNAMDGDTVR
VKLTSGYDAKLKGKITEVVQRGRTEFIGTLQMNRGFGFVLGDKEKGLPDIYIPAENLNNA
KNGQKVVARILRWEKEDKRPVGAIVSVLDEEKAGDIAMKETLLEKGFPLTFSDAAMEVAG
RISDIITKEELSKRKDVRGTLTFTIDPEDAKDFDDAISFRILKNGNYEIGVHIADVSHYV
VPGTALDDEAYFRATSVYLPDRVNPMLPEHISNVLCSLRPDEDKLAFSAIFQLNEKAEVK
QYWLGKTVIRSNRRYTYEDAQQIIETGTGDNAEVLLTVHKLAQRLRQSRFDEGAINFNST
EVRFKLDEHGAPVGIVLKVSKEANQLIEELMLLANKYVAESASKVKINNKTLPFPYRIHD
TPDEEKLLPFIAFANKFGYRFDSSSAEAIAASFDKLLRDIKGRPEEAVLQQLGIRTMAKA
KYTSSNIGHYGLGFENYCHFTSPIRRYPDIMVHRILLDILEDRAKVDKKLEEKCKHCSDR
ERAAMEAERSANKYKQVEYMQQFVGEEFDAIISGVSKYGFWAETVAHLCEGMVSMASLSE
YDTFKHSEADYALIGLRTGTKFTMGDKVRIQVVAANLEKRHLDYHWVQPASSSKPGKKRS
SGKSSRQKGSRQGGK
NT seq 2028 nt   +upstreamnt  +downstreamnt
atgacaaaaaaaacaaaaaaaaagaagtcccggtcatcgtccggaagcgagccgttgctg
aagggggtgcttgaagttacgagatccggaagagggtttgtaattgtaccagggcttgag
gaagatattctcatccgcccggaagacctgaagaatgcaatggatggcgatacggtgcgg
gttaaactgacctcaggatatgatgccaagctaaagggaaagataacggaggtggtacag
cgcggaaggactgagtttatcggaaccctgcaaatgaacagaggctttggatttgtgctg
ggcgataaagaaaaaggattgccggatatttatattcctgcagaaaatctgaacaatgca
aagaacggccagaaagtagtggcaagaatacttcgttgggaaaaagaagataaacgtcct
gtgggcgctattgtatctgtactggatgaagaaaaggcaggtgatattgctatgaaagaa
accttgctggaaaaaggattcccgcttactttttctgatgccgctatggaagtggcaggc
cgtatttcggatattattacaaaggaagagctctccaagcgaaaagatgtgcggggaacc
cttacatttacaatagatcccgaagatgcaaaagattttgatgacgccatctcttttcgt
attttaaagaacggaaactatgaaataggagttcacattgcagatgtaagccattatgtg
gtgccgggcactgctttagacgatgaagcctacttcagggcaacatccgtatacctgccg
gatcgtgtaaaccccatgctgcctgagcatatttccaatgtactttgttcattgcggcct
gatgaagacaaactggccttttctgctatcttccagttgaatgagaaggcagaggtaaaa
caatactggctgggcaaaacagtgatccgctccaacaggcggtatacctatgaagatgcc
cagcagatcattgaaaccggtacaggagataatgcggaggtgcttttaaccgtgcataaa
ttagctcaacgcttaaggcaaagccggtttgatgaaggcgctatcaactttaactctact
gaagtacgttttaagctggatgagcatggtgctcctgtaggcattgttttaaaagtaagc
aaggaagccaaccagcttattgaagaactgatgctcctggctaataaatacgtggctgaa
tctgcatctaaagtaaaaatcaataataaaacattaccattcccttaccggattcatgat
accccagatgaggaaaaactgctgccgtttattgcttttgccaataagttcgggtaccga
tttgacagctccagcgcagaagcaattgccgcatcctttgataaattattaagagatatc
aagggacgcccggaagaggctgtattgcagcaactgggtatccgcaccatggccaaggcc
aaatacacttcatccaacatcgggcattacgggctgggctttgaaaactactgccatttt
acatcgccgatccgccgttacccggatataatggtgcatcgtatcctgctggacatcctg
gaagacagggcaaaggtggacaagaagctggaagaaaaatgcaaacattgcagcgaccgg
gagcgggctgctatggaggcggagcgcagcgctaataaatacaagcaggtagaatatatg
cagcagtttgtaggcgaagagtttgatgccatcatcagcggtgtttccaagtatggtttc
tgggcagaaacggttgcgcatttgtgtgagggtatggtcagcatggccagcctctcggag
tatgatacctttaagcattctgaggcagattatgcgctgatagggctacgcaccggtact
aaatttacaatgggagataaggtacggatacaggtagtagcggctaatcttgaaaaaaga
catttggattatcattgggtgcaacccgcctcatcatcaaaaccgggaaagaagcggtca
tcaggaaaaagcagcagacaaaagggcagcaggcagggcggcaagtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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