KEGG   Candidatus Nitrotoga sp. AM1P: W01_04560
Entry
W01_04560         CDS       T06613                                 
Symbol
hup_1
Name
(GenBank) DNA-binding protein HU-beta
  KO
K03530  DNA-binding protein HU-beta
Organism
nim  Candidatus Nitrotoga sp. AM1P
Brite
KEGG Orthology (KO) [BR:nim00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nim03032]
    W01_04560 (hup_1)
   03036 Chromosome and associated proteins [BR:nim03036]
    W01_04560 (hup_1)
   03400 DNA repair and recombination proteins [BR:nim03400]
    W01_04560 (hup_1)
DNA replication proteins [BR:nim03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    W01_04560 (hup_1)
Chromosome and associated proteins [BR:nim03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    W01_04560 (hup_1)
DNA repair and recombination proteins [BR:nim03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      W01_04560 (hup_1)
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_euk_1 HU-CCDC81_euk_2 HU-CCDC81_bac_1
Other DBs
NCBI-ProteinID: BBJ22529
UniProt: A0A455X2A6
Position
543711..544004
AA seq 97 aa
MNKAELIDAVAKSTKNSKVNVEEILNALMAAIQASLVKGDNVQLIGFGTFAVEQRAARIG
RNPATGKELKIPAKKVAKFKVGSKLKDAVADVKAKKK
NT seq 294 nt   +upstreamnt  +downstreamnt
atgaataaagcggagttgattgatgcagtagcgaagtccacaaaaaattccaaggtcaat
gtcgaggaaatactgaatgcgttgatggctgctatacaagcgtcattggtaaaaggcgat
aacgtgcagctgattggttttggcacctttgctgtcgaacagcgtgctgctcggataggt
cgaaatccagctaccggaaaagagctgaaaataccggccaagaaagttgcgaaatttaaa
gtcggcagcaagttgaaagacgcagttgctgacgtcaaagctaaaaagaagtaa

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