KEGG   Candidatus Nitrosopumilus sediminis: NSED_08700
Entry
NSED_08700        CDS       T02303                                 
Name
(GenBank) transcription factor TFIIE subunit alpha
  KO
K03136  transcription initiation factor TFIIE subunit alpha
Organism
nir  Candidatus Nitrosopumilus sediminis
Pathway
nir03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:nir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    NSED_08700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nir03021]
    NSED_08700
Transcription machinery [BR:nir03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIE
     NSED_08700
 Prokaryotic type
  Archaeal type
    TFE
     NSED_08700
SSDB
Motif
Pfam: TFIIE_alpha Sushi_2 TrmB Sigma70_r3 zf-C3HC zf_CopZ
Other DBs
NCBI-ProteinID: AFS83532
UniProt: K0BEQ2
Position
1467552..1468067
AA seq 171 aa
MVDKYEDPFVRIASMIGGDEYLKVARSLLKAEDATDEEIASSTGLRINMVRKVLYDLFGK
SLITGIRVKDERKGWFVYRWRTRREEVEHFIENQKKKIEERLQQRLDYENASDFYHCGNE
DCPRVTFENALDGMFKCPSCQNVLNLKKNDKSKKAYQKKIDEIKKDMQQTF
NT seq 516 nt   +upstreamnt  +downstreamnt
ttggtagacaaatacgaagatccttttgtaagaattgcttcaatgattgggggagacgaa
tacctcaaagtagcaagatcccttctaaaagctgaagatgctactgatgaagaaattgct
agttctacaggtcttagaatcaacatggtacgaaaagtattgtatgatctatttggaaaa
tccctcatcacaggaattagagtcaaagatgaacgaaaaggatggtttgtctatagatgg
aggactaggagagaagaagtcgaacattttattgaaaatcaaaagaagaagattgaggaa
agattacaacaaagattagattatgaaaacgcttcagatttctatcattgtggtaatgaa
gattgtcctagggtgacatttgaaaatgctcttgatggaatgttcaaatgcccatcatgt
caaaatgttttgaacctaaaaaagaatgataaatctaaaaaagcatatcagaaaaaaatt
gatgaaatcaaaaaagacatgcaacaaactttttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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